Hb_000599_060

Information

Type -
Description -
Location Contig599: 48216-49914
Sequence    

Annotation

kegg
ID rcu:RCOM_0488320
description legumin B precursor, putative
nr
ID XP_012085315.1
description PREDICTED: legumin A-like [Jatropha curcas]
swissprot
ID P09802
description Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2
trembl
ID A0A067K3Z1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17687 PE=4 SV=1
Gene Ontology
ID GO:0045735
description legumin a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50436: 48700-49826 , PASA_asmbl_50437: 49827-50106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_060 0.0 - - PREDICTED: legumin A-like [Jatropha curcas]
2 Hb_001809_040 0.0171097152 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
3 Hb_004532_010 0.0276791383 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
4 Hb_183366_010 0.0305940442 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
5 Hb_163115_010 0.072661301 - - -
6 Hb_012193_020 0.1056356858 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_027014_010 0.1122462735 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_004162_300 0.1200927066 - - monovalent cation:proton antiporter, putative [Ricinus communis]
9 Hb_034050_010 0.1864634486 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
10 Hb_121031_010 0.1969262854 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
11 Hb_000875_100 0.2570250608 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
12 Hb_000284_070 0.2612396692 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
13 Hb_007192_110 0.3116705201 - - -
14 Hb_037271_010 0.3143165532 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_007761_050 0.3175223998 - - calcineurin-like protein [Hevea brasiliensis]
16 Hb_046707_010 0.3313483965 - - PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
17 Hb_011401_010 0.3433556879 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
18 Hb_124480_010 0.3450893991 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_002231_050 0.3572418199 - - -
20 Hb_003304_040 0.3578693869 - - hypothetical protein CICLE_v10003343mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000599_060 Hb_000599_060 Hb_001809_040 Hb_001809_040 Hb_000599_060--Hb_001809_040 Hb_004532_010 Hb_004532_010 Hb_000599_060--Hb_004532_010 Hb_183366_010 Hb_183366_010 Hb_000599_060--Hb_183366_010 Hb_163115_010 Hb_163115_010 Hb_000599_060--Hb_163115_010 Hb_012193_020 Hb_012193_020 Hb_000599_060--Hb_012193_020 Hb_027014_010 Hb_027014_010 Hb_000599_060--Hb_027014_010 Hb_001809_040--Hb_183366_010 Hb_001809_040--Hb_004532_010 Hb_001809_040--Hb_163115_010 Hb_001809_040--Hb_027014_010 Hb_004162_300 Hb_004162_300 Hb_001809_040--Hb_004162_300 Hb_004532_010--Hb_183366_010 Hb_004532_010--Hb_012193_020 Hb_004532_010--Hb_163115_010 Hb_004532_010--Hb_027014_010 Hb_183366_010--Hb_163115_010 Hb_183366_010--Hb_027014_010 Hb_183366_010--Hb_004162_300 Hb_163115_010--Hb_027014_010 Hb_163115_010--Hb_004162_300 Hb_012193_020--Hb_001809_040 Hb_012193_020--Hb_183366_010 Hb_012193_020--Hb_163115_010 Hb_000284_070 Hb_000284_070 Hb_012193_020--Hb_000284_070 Hb_027014_010--Hb_004162_300 Hb_034050_010 Hb_034050_010 Hb_027014_010--Hb_034050_010 Hb_121031_010 Hb_121031_010 Hb_027014_010--Hb_121031_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0146191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0329753 0 0 0 0

CAGE analysis