Hb_000284_070

Information

Type -
Description -
Location Contig284: 133153-136113
Sequence    

Annotation

kegg
ID tcc:TCM_019048
description Leucine-rich repeat-containing protein, putative
nr
ID KDP42425.1
description hypothetical protein JCGZ_00222 [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067LD49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00222 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_070 0.0 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
2 Hb_007761_050 0.1403734114 - - calcineurin-like protein [Hevea brasiliensis]
3 Hb_001257_020 0.2010480055 - - -
4 Hb_012193_020 0.2106662193 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_004532_010 0.2449941938 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
6 Hb_000599_060 0.2612396692 - - PREDICTED: legumin A-like [Jatropha curcas]
7 Hb_148262_020 0.2678335663 - - -
8 Hb_000083_190 0.2712964515 - - low affinity nitrate transporter, partial [Triticum aestivum]
9 Hb_001809_040 0.2720627857 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
10 Hb_106029_010 0.2744450963 - - Transcription factor ICE1, putative [Ricinus communis]
11 Hb_183366_010 0.28095465 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
12 Hb_137268_010 0.2813088611 - - -
13 Hb_000956_140 0.2945727056 - - -
14 Hb_175572_010 0.2975839785 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_163115_010 0.3104038264 - - -
16 Hb_001865_110 0.3132531108 - - -
17 Hb_000270_150 0.3170202957 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_017436_010 0.3180204718 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_002272_190 0.3252839979 - - Kinesin heavy chain, putative [Ricinus communis]
20 Hb_000003_770 0.3256780355 - - -

Gene co-expression network

sample Hb_000284_070 Hb_000284_070 Hb_007761_050 Hb_007761_050 Hb_000284_070--Hb_007761_050 Hb_001257_020 Hb_001257_020 Hb_000284_070--Hb_001257_020 Hb_012193_020 Hb_012193_020 Hb_000284_070--Hb_012193_020 Hb_004532_010 Hb_004532_010 Hb_000284_070--Hb_004532_010 Hb_000599_060 Hb_000599_060 Hb_000284_070--Hb_000599_060 Hb_148262_020 Hb_148262_020 Hb_000284_070--Hb_148262_020 Hb_007761_050--Hb_001257_020 Hb_088496_010 Hb_088496_010 Hb_007761_050--Hb_088496_010 Hb_007761_050--Hb_148262_020 Hb_000003_770 Hb_000003_770 Hb_007761_050--Hb_000003_770 Hb_004297_030 Hb_004297_030 Hb_007761_050--Hb_004297_030 Hb_001257_020--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_001257_020--Hb_001379_130 Hb_001257_020--Hb_148262_020 Hb_001257_020--Hb_088496_010 Hb_001257_020--Hb_004297_030 Hb_012193_020--Hb_004532_010 Hb_012193_020--Hb_000599_060 Hb_001809_040 Hb_001809_040 Hb_012193_020--Hb_001809_040 Hb_183366_010 Hb_183366_010 Hb_012193_020--Hb_183366_010 Hb_163115_010 Hb_163115_010 Hb_012193_020--Hb_163115_010 Hb_004532_010--Hb_000599_060 Hb_004532_010--Hb_001809_040 Hb_004532_010--Hb_183366_010 Hb_004532_010--Hb_163115_010 Hb_027014_010 Hb_027014_010 Hb_004532_010--Hb_027014_010 Hb_000599_060--Hb_001809_040 Hb_000599_060--Hb_183366_010 Hb_000599_060--Hb_163115_010 Hb_000599_060--Hb_027014_010 Hb_106029_010 Hb_106029_010 Hb_148262_020--Hb_106029_010 Hb_000270_150 Hb_000270_150 Hb_148262_020--Hb_000270_150 Hb_148262_020--Hb_001379_130 Hb_000736_010 Hb_000736_010 Hb_148262_020--Hb_000736_010 Hb_148262_020--Hb_000003_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0380083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.232688 0.0228834 0 0 0

CAGE analysis