Hb_000736_010

Information

Type -
Description -
Location Contig736: 58836-68611
Sequence    

Annotation

kegg
ID gmx:102660623
description uncharacterized LOC102660623
nr
ID XP_012435451.1
description PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID J3NB79
description Uncharacterized protein OS=Oryza brachyantha GN=OB12G12370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000736_010 0.0 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
2 Hb_039305_010 0.160150219 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
3 Hb_148262_020 0.1813407244 - - -
4 Hb_159085_010 0.1914447676 - - -
5 Hb_000067_020 0.1956961969 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
6 Hb_002233_110 0.2009624661 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
7 Hb_005222_020 0.2083308635 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
8 Hb_000270_150 0.2085451995 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_030765_010 0.2148730786 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
10 Hb_106029_010 0.2163048349 - - Transcription factor ICE1, putative [Ricinus communis]
11 Hb_001379_130 0.2210277485 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
12 Hb_000003_770 0.2238138604 - - -
13 Hb_000373_300 0.2286933298 - - hypothetical protein F775_20382 [Aegilops tauschii]
14 Hb_003773_030 0.2292281361 - - -
15 Hb_039548_010 0.2307311953 - - hypothetical protein RCOM_1685970 [Ricinus communis]
16 Hb_000501_020 0.2347061346 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
17 Hb_145890_010 0.2391450676 - - unnamed protein product [Vitis vinifera]
18 Hb_008092_140 0.2430962074 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
19 Hb_188382_010 0.2456051278 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_001141_400 0.2470364763 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_000736_010 Hb_000736_010 Hb_039305_010 Hb_039305_010 Hb_000736_010--Hb_039305_010 Hb_148262_020 Hb_148262_020 Hb_000736_010--Hb_148262_020 Hb_159085_010 Hb_159085_010 Hb_000736_010--Hb_159085_010 Hb_000067_020 Hb_000067_020 Hb_000736_010--Hb_000067_020 Hb_002233_110 Hb_002233_110 Hb_000736_010--Hb_002233_110 Hb_005222_020 Hb_005222_020 Hb_000736_010--Hb_005222_020 Hb_039305_010--Hb_000067_020 Hb_000979_050 Hb_000979_050 Hb_039305_010--Hb_000979_050 Hb_008092_140 Hb_008092_140 Hb_039305_010--Hb_008092_140 Hb_003773_030 Hb_003773_030 Hb_039305_010--Hb_003773_030 Hb_039305_010--Hb_159085_010 Hb_001257_020 Hb_001257_020 Hb_148262_020--Hb_001257_020 Hb_106029_010 Hb_106029_010 Hb_148262_020--Hb_106029_010 Hb_000270_150 Hb_000270_150 Hb_148262_020--Hb_000270_150 Hb_001379_130 Hb_001379_130 Hb_148262_020--Hb_001379_130 Hb_000003_770 Hb_000003_770 Hb_148262_020--Hb_000003_770 Hb_159085_010--Hb_003773_030 Hb_001141_400 Hb_001141_400 Hb_159085_010--Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_159085_010--Hb_000373_300 Hb_159085_010--Hb_000067_020 Hb_000067_020--Hb_000270_150 Hb_000067_020--Hb_000979_050 Hb_000067_020--Hb_003773_030 Hb_000067_020--Hb_008092_140 Hb_001437_050 Hb_001437_050 Hb_002233_110--Hb_001437_050 Hb_019033_010 Hb_019033_010 Hb_002233_110--Hb_019033_010 Hb_000091_100 Hb_000091_100 Hb_002233_110--Hb_000091_100 Hb_004502_080 Hb_004502_080 Hb_002233_110--Hb_004502_080 Hb_002835_220 Hb_002835_220 Hb_002233_110--Hb_002835_220 Hb_001865_110 Hb_001865_110 Hb_005222_020--Hb_001865_110 Hb_000275_010 Hb_000275_010 Hb_005222_020--Hb_000275_010 Hb_005222_020--Hb_001379_130 Hb_005222_020--Hb_000003_770 Hb_000501_020 Hb_000501_020 Hb_005222_020--Hb_000501_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0269853 0.0134275 0 0 0.0261545 0.0641217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.33807 0.241792 0 0 0

CAGE analysis