Hb_148262_020

Information

Type -
Description -
Location Contig148262: 7921-8641
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148262_020 0.0 - - -
2 Hb_001257_020 0.1492417589 - - -
3 Hb_106029_010 0.1749109301 - - Transcription factor ICE1, putative [Ricinus communis]
4 Hb_000270_150 0.1764686923 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_001379_130 0.1787797354 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
6 Hb_000736_010 0.1813407244 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
7 Hb_000003_770 0.1883403621 - - -
8 Hb_007761_050 0.201171526 - - calcineurin-like protein [Hevea brasiliensis]
9 Hb_000067_020 0.2192273918 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
10 Hb_001865_110 0.2258167354 - - -
11 Hb_005222_020 0.2317800841 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
12 Hb_001534_020 0.2328267126 - - conserved hypothetical protein [Ricinus communis]
13 Hb_039305_010 0.2341840113 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
14 Hb_008092_140 0.236063924 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
15 Hb_001105_080 0.2362790879 - - -
16 Hb_005396_140 0.2366258825 - - -
17 Hb_140618_010 0.2368169681 - - -
18 Hb_001241_090 0.2368195978 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
19 Hb_052600_010 0.23682943 - - -
20 Hb_007913_040 0.237431265 - - sterol desaturase, putative [Ricinus communis]

Gene co-expression network

sample Hb_148262_020 Hb_148262_020 Hb_001257_020 Hb_001257_020 Hb_148262_020--Hb_001257_020 Hb_106029_010 Hb_106029_010 Hb_148262_020--Hb_106029_010 Hb_000270_150 Hb_000270_150 Hb_148262_020--Hb_000270_150 Hb_001379_130 Hb_001379_130 Hb_148262_020--Hb_001379_130 Hb_000736_010 Hb_000736_010 Hb_148262_020--Hb_000736_010 Hb_000003_770 Hb_000003_770 Hb_148262_020--Hb_000003_770 Hb_007761_050 Hb_007761_050 Hb_001257_020--Hb_007761_050 Hb_001257_020--Hb_000003_770 Hb_001257_020--Hb_001379_130 Hb_088496_010 Hb_088496_010 Hb_001257_020--Hb_088496_010 Hb_004297_030 Hb_004297_030 Hb_001257_020--Hb_004297_030 Hb_001865_110 Hb_001865_110 Hb_106029_010--Hb_001865_110 Hb_000501_020 Hb_000501_020 Hb_106029_010--Hb_000501_020 Hb_106029_010--Hb_001257_020 Hb_106029_010--Hb_000736_010 Hb_005222_020 Hb_005222_020 Hb_106029_010--Hb_005222_020 Hb_000067_020 Hb_000067_020 Hb_000270_150--Hb_000067_020 Hb_007913_040 Hb_007913_040 Hb_000270_150--Hb_007913_040 Hb_002245_040 Hb_002245_040 Hb_000270_150--Hb_002245_040 Hb_000270_150--Hb_001257_020 Hb_000270_150--Hb_000736_010 Hb_001379_130--Hb_000003_770 Hb_001379_130--Hb_088496_010 Hb_012324_020 Hb_012324_020 Hb_001379_130--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_001379_130--Hb_094721_010 Hb_001379_130--Hb_004297_030 Hb_039305_010 Hb_039305_010 Hb_000736_010--Hb_039305_010 Hb_159085_010 Hb_159085_010 Hb_000736_010--Hb_159085_010 Hb_000736_010--Hb_000067_020 Hb_002233_110 Hb_002233_110 Hb_000736_010--Hb_002233_110 Hb_000736_010--Hb_005222_020 Hb_000003_770--Hb_088496_010 Hb_000003_770--Hb_004297_030 Hb_000003_770--Hb_012324_020 Hb_000003_770--Hb_094721_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.195005 0.755322 0 0 0.371949 3.46295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.7402 13.0038 0 0.337015 0

CAGE analysis