Hb_005222_020

Information

Type -
Description -
Location Contig5222: 3297-3989
Sequence    

Annotation

kegg
ID bvg:104902491
description uncharacterized LOC104902491
nr
ID CCA66036.1
description hypothetical protein [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCI4
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005222_020 0.0 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
2 Hb_001865_110 0.1461758722 - - -
3 Hb_000275_010 0.1776365124 - - -
4 Hb_001379_130 0.1870924262 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
5 Hb_000003_770 0.1952650681 - - -
6 Hb_000501_020 0.2064960414 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
7 Hb_000736_010 0.2083308635 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
8 Hb_145890_010 0.2088203533 - - unnamed protein product [Vitis vinifera]
9 Hb_000094_260 0.2128736797 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000270_150 0.2143229816 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_002741_030 0.2283386865 - - -
12 Hb_106029_010 0.2305086827 - - Transcription factor ICE1, putative [Ricinus communis]
13 Hb_006922_040 0.230601641 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_148262_020 0.2317800841 - - -
15 Hb_001257_020 0.2330970073 - - -
16 Hb_039305_010 0.2352708662 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
17 Hb_001186_050 0.2453417183 - - -
18 Hb_008092_140 0.2456851059 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
19 Hb_000184_190 0.2458597422 - - hypothetical protein VITISV_016970 [Vitis vinifera]
20 Hb_088496_010 0.2520974677 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_005222_020 Hb_005222_020 Hb_001865_110 Hb_001865_110 Hb_005222_020--Hb_001865_110 Hb_000275_010 Hb_000275_010 Hb_005222_020--Hb_000275_010 Hb_001379_130 Hb_001379_130 Hb_005222_020--Hb_001379_130 Hb_000003_770 Hb_000003_770 Hb_005222_020--Hb_000003_770 Hb_000501_020 Hb_000501_020 Hb_005222_020--Hb_000501_020 Hb_000736_010 Hb_000736_010 Hb_005222_020--Hb_000736_010 Hb_106029_010 Hb_106029_010 Hb_001865_110--Hb_106029_010 Hb_001865_110--Hb_000501_020 Hb_141408_010 Hb_141408_010 Hb_001865_110--Hb_141408_010 Hb_148262_020 Hb_148262_020 Hb_001865_110--Hb_148262_020 Hb_000270_150 Hb_000270_150 Hb_001865_110--Hb_000270_150 Hb_005199_010 Hb_005199_010 Hb_000275_010--Hb_005199_010 Hb_109578_010 Hb_109578_010 Hb_000275_010--Hb_109578_010 Hb_002741_030 Hb_002741_030 Hb_000275_010--Hb_002741_030 Hb_145890_010 Hb_145890_010 Hb_000275_010--Hb_145890_010 Hb_001186_050 Hb_001186_050 Hb_000275_010--Hb_001186_050 Hb_001379_130--Hb_000003_770 Hb_001257_020 Hb_001257_020 Hb_001379_130--Hb_001257_020 Hb_088496_010 Hb_088496_010 Hb_001379_130--Hb_088496_010 Hb_012324_020 Hb_012324_020 Hb_001379_130--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_001379_130--Hb_094721_010 Hb_004297_030 Hb_004297_030 Hb_001379_130--Hb_004297_030 Hb_000003_770--Hb_088496_010 Hb_000003_770--Hb_001257_020 Hb_000003_770--Hb_004297_030 Hb_000003_770--Hb_012324_020 Hb_000003_770--Hb_094721_010 Hb_006922_040 Hb_006922_040 Hb_000501_020--Hb_006922_040 Hb_000445_220 Hb_000445_220 Hb_000501_020--Hb_000445_220 Hb_081207_010 Hb_081207_010 Hb_000501_020--Hb_081207_010 Hb_000501_020--Hb_106029_010 Hb_039305_010 Hb_039305_010 Hb_000736_010--Hb_039305_010 Hb_000736_010--Hb_148262_020 Hb_159085_010 Hb_159085_010 Hb_000736_010--Hb_159085_010 Hb_000067_020 Hb_000067_020 Hb_000736_010--Hb_000067_020 Hb_002233_110 Hb_002233_110 Hb_000736_010--Hb_002233_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0710354 0 0.0537461 0 0 0.140627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.902516 0.709491 0 0 0

CAGE analysis