Hb_005199_010

Information

Type -
Description -
Location Contig5199: 14-798
Sequence    

Annotation

kegg
ID rcu:RCOM_0724580
description hypothetical protein
nr
ID XP_002524890.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005199_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_109578_010 0.1441270272 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000275_010 0.1689850799 - - -
4 Hb_001405_130 0.1887383095 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
5 Hb_004048_010 0.2004233791 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
6 Hb_000345_430 0.2065351595 - - 40S ribosomal protein S24A [Hevea brasiliensis]
7 Hb_007765_120 0.2160742722 - - glycogen phosphorylase, putative [Ricinus communis]
8 Hb_013492_010 0.2174435043 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
9 Hb_005463_060 0.2197711761 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
10 Hb_015978_070 0.2270274838 - - -
11 Hb_001575_030 0.2284855575 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
12 Hb_001488_400 0.2287305368 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
13 Hb_003988_040 0.2301560745 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
14 Hb_000915_100 0.2367722324 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
15 Hb_009659_020 0.2383861783 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
16 Hb_029888_020 0.2400012129 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
17 Hb_000500_210 0.2403172918 - - -
18 Hb_007574_060 0.2405080742 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
19 Hb_021924_010 0.2406377147 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
20 Hb_003405_060 0.2411363499 - - -

Gene co-expression network

sample Hb_005199_010 Hb_005199_010 Hb_109578_010 Hb_109578_010 Hb_005199_010--Hb_109578_010 Hb_000275_010 Hb_000275_010 Hb_005199_010--Hb_000275_010 Hb_001405_130 Hb_001405_130 Hb_005199_010--Hb_001405_130 Hb_004048_010 Hb_004048_010 Hb_005199_010--Hb_004048_010 Hb_000345_430 Hb_000345_430 Hb_005199_010--Hb_000345_430 Hb_007765_120 Hb_007765_120 Hb_005199_010--Hb_007765_120 Hb_109578_010--Hb_000275_010 Hb_000179_150 Hb_000179_150 Hb_109578_010--Hb_000179_150 Hb_109578_010--Hb_004048_010 Hb_084889_010 Hb_084889_010 Hb_109578_010--Hb_084889_010 Hb_001017_080 Hb_001017_080 Hb_109578_010--Hb_001017_080 Hb_005222_020 Hb_005222_020 Hb_000275_010--Hb_005222_020 Hb_002741_030 Hb_002741_030 Hb_000275_010--Hb_002741_030 Hb_145890_010 Hb_145890_010 Hb_000275_010--Hb_145890_010 Hb_001186_050 Hb_001186_050 Hb_000275_010--Hb_001186_050 Hb_000562_080 Hb_000562_080 Hb_001405_130--Hb_000562_080 Hb_013492_010 Hb_013492_010 Hb_001405_130--Hb_013492_010 Hb_001405_130--Hb_004048_010 Hb_008442_010 Hb_008442_010 Hb_001405_130--Hb_008442_010 Hb_003405_060 Hb_003405_060 Hb_001405_130--Hb_003405_060 Hb_029982_010 Hb_029982_010 Hb_004048_010--Hb_029982_010 Hb_000134_020 Hb_000134_020 Hb_004048_010--Hb_000134_020 Hb_003638_080 Hb_003638_080 Hb_004048_010--Hb_003638_080 Hb_029888_020 Hb_029888_020 Hb_004048_010--Hb_029888_020 Hb_009659_020 Hb_009659_020 Hb_000345_430--Hb_009659_020 Hb_015978_070 Hb_015978_070 Hb_000345_430--Hb_015978_070 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_012305_120 Hb_012305_120 Hb_000345_430--Hb_012305_120 Hb_007520_060 Hb_007520_060 Hb_000345_430--Hb_007520_060 Hb_001587_060 Hb_001587_060 Hb_000345_430--Hb_001587_060 Hb_007290_080 Hb_007290_080 Hb_007765_120--Hb_007290_080 Hb_002713_080 Hb_002713_080 Hb_007765_120--Hb_002713_080 Hb_148909_020 Hb_148909_020 Hb_007765_120--Hb_148909_020 Hb_007765_120--Hb_015978_070 Hb_000184_100 Hb_000184_100 Hb_007765_120--Hb_000184_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.40135 0.642987 1.60073 3.49837 0.604913 9.81669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7957 25.8221 0 0.552659 0.799595

CAGE analysis