Hb_001017_080

Information

Type -
Description -
Location Contig1017: 85891-86982
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06020g
description hypothetical protein
nr
ID XP_006378257.1
description hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G133
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06020g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_080 0.0 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
2 Hb_000025_440 0.2061226556 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
3 Hb_156503_040 0.2069636489 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_109578_010 0.2237498908 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000500_210 0.2255260251 - - -
6 Hb_004931_010 0.2259531963 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
7 Hb_000975_270 0.2272568484 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
8 Hb_000612_040 0.2307864409 - - hypothetical protein OsJ_16945 [Oryza sativa Japonica Group]
9 Hb_004128_040 0.234989486 - - -
10 Hb_032974_010 0.2349917595 - - -
11 Hb_000451_060 0.237449205 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
12 Hb_001754_140 0.2425607199 - - PREDICTED: uncharacterized protein LOC105643419 [Jatropha curcas]
13 Hb_000275_130 0.2428203551 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
14 Hb_007885_010 0.2429853489 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
15 Hb_182005_010 0.245744905 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
16 Hb_000445_190 0.2486743703 - - -
17 Hb_069022_010 0.2504555978 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001488_400 0.2508331404 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
19 Hb_000442_090 0.2509212511 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
20 Hb_000212_210 0.251026356 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001017_080 Hb_001017_080 Hb_000025_440 Hb_000025_440 Hb_001017_080--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_001017_080--Hb_156503_040 Hb_109578_010 Hb_109578_010 Hb_001017_080--Hb_109578_010 Hb_000500_210 Hb_000500_210 Hb_001017_080--Hb_000500_210 Hb_004931_010 Hb_004931_010 Hb_001017_080--Hb_004931_010 Hb_000975_270 Hb_000975_270 Hb_001017_080--Hb_000975_270 Hb_182005_010 Hb_182005_010 Hb_000025_440--Hb_182005_010 Hb_000239_110 Hb_000239_110 Hb_000025_440--Hb_000239_110 Hb_000025_440--Hb_156503_040 Hb_001022_040 Hb_001022_040 Hb_000025_440--Hb_001022_040 Hb_000025_440--Hb_000500_210 Hb_123763_010 Hb_123763_010 Hb_156503_040--Hb_123763_010 Hb_156503_040--Hb_182005_010 Hb_156503_040--Hb_109578_010 Hb_069022_010 Hb_069022_010 Hb_156503_040--Hb_069022_010 Hb_005199_010 Hb_005199_010 Hb_109578_010--Hb_005199_010 Hb_000275_010 Hb_000275_010 Hb_109578_010--Hb_000275_010 Hb_000179_150 Hb_000179_150 Hb_109578_010--Hb_000179_150 Hb_004048_010 Hb_004048_010 Hb_109578_010--Hb_004048_010 Hb_084889_010 Hb_084889_010 Hb_109578_010--Hb_084889_010 Hb_011224_040 Hb_011224_040 Hb_000500_210--Hb_011224_040 Hb_004429_110 Hb_004429_110 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030 Hb_001186_080 Hb_001186_080 Hb_004931_010--Hb_001186_080 Hb_003322_010 Hb_003322_010 Hb_004931_010--Hb_003322_010 Hb_000191_030 Hb_000191_030 Hb_004931_010--Hb_000191_030 Hb_153216_010 Hb_153216_010 Hb_004931_010--Hb_153216_010 Hb_001504_050 Hb_001504_050 Hb_004931_010--Hb_001504_050 Hb_032974_010 Hb_032974_010 Hb_000975_270--Hb_032974_010 Hb_005714_050 Hb_005714_050 Hb_000975_270--Hb_005714_050 Hb_186158_010 Hb_186158_010 Hb_000975_270--Hb_186158_010 Hb_000975_270--Hb_011224_040 Hb_000046_200 Hb_000046_200 Hb_000975_270--Hb_000046_200 Hb_000975_270--Hb_069022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.356814 0.0756945 0.188692 0.251804 0.0761658 0.0721579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.845847 1.25578 0 0.18126 0

CAGE analysis