Hb_005714_050

Information

Type transcription factor
Description TF Family: B3
Location Contig5714: 29018-29413
Sequence    

Annotation

kegg
ID pop:POPTR_1461s00200g
description hypothetical protein
nr
ID XP_006387231.1
description hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
swissprot
ID Q7XKK6
description Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3
trembl
ID U7DT82
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1461s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49370: 29049-29412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005714_050 0.0 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
2 Hb_032974_010 0.1739864707 - - -
3 Hb_000975_270 0.1823729484 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
4 Hb_069022_010 0.186592541 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000111_230 0.2288266675 - - -
6 Hb_000025_440 0.2361535498 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
7 Hb_156503_040 0.2412905629 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_004097_040 0.242482863 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_123763_010 0.2474827363 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
10 Hb_000414_150 0.2534873748 - - mta/sah nucleosidase, putative [Ricinus communis]
11 Hb_002094_040 0.2538816144 - - Organic cation transporter protein [Aegilops tauschii]
12 Hb_001386_080 0.2577732426 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
13 Hb_186158_010 0.2614356486 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000445_190 0.2619674211 - - -
15 Hb_006376_010 0.2667070546 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
16 Hb_000500_210 0.2707641934 - - -
17 Hb_007904_270 0.275034787 - - -
18 Hb_182005_010 0.2763624797 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
19 Hb_001017_080 0.276851555 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
20 Hb_021906_010 0.2775366544 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]

Gene co-expression network

sample Hb_005714_050 Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_005714_050--Hb_032974_010 Hb_000975_270 Hb_000975_270 Hb_005714_050--Hb_000975_270 Hb_069022_010 Hb_069022_010 Hb_005714_050--Hb_069022_010 Hb_000111_230 Hb_000111_230 Hb_005714_050--Hb_000111_230 Hb_000025_440 Hb_000025_440 Hb_005714_050--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_005714_050--Hb_156503_040 Hb_032974_010--Hb_000975_270 Hb_032974_010--Hb_069022_010 Hb_084889_010 Hb_084889_010 Hb_032974_010--Hb_084889_010 Hb_001017_080 Hb_001017_080 Hb_032974_010--Hb_001017_080 Hb_032974_010--Hb_000111_230 Hb_186158_010 Hb_186158_010 Hb_000975_270--Hb_186158_010 Hb_011224_040 Hb_011224_040 Hb_000975_270--Hb_011224_040 Hb_000046_200 Hb_000046_200 Hb_000975_270--Hb_000046_200 Hb_000975_270--Hb_069022_010 Hb_000445_190 Hb_000445_190 Hb_069022_010--Hb_000445_190 Hb_000099_230 Hb_000099_230 Hb_069022_010--Hb_000099_230 Hb_069022_010--Hb_000111_230 Hb_004241_010 Hb_004241_010 Hb_000111_230--Hb_004241_010 Hb_000414_150 Hb_000414_150 Hb_000111_230--Hb_000414_150 Hb_002157_090 Hb_002157_090 Hb_000111_230--Hb_002157_090 Hb_000025_440--Hb_001017_080 Hb_182005_010 Hb_182005_010 Hb_000025_440--Hb_182005_010 Hb_000239_110 Hb_000239_110 Hb_000025_440--Hb_000239_110 Hb_000025_440--Hb_156503_040 Hb_001022_040 Hb_001022_040 Hb_000025_440--Hb_001022_040 Hb_000500_210 Hb_000500_210 Hb_000025_440--Hb_000500_210 Hb_123763_010 Hb_123763_010 Hb_156503_040--Hb_123763_010 Hb_156503_040--Hb_001017_080 Hb_156503_040--Hb_182005_010 Hb_109578_010 Hb_109578_010 Hb_156503_040--Hb_109578_010 Hb_156503_040--Hb_069022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111895 0.0752613 0.0674209 0.459663 0.173517 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42224 1.75552 0 0 0

CAGE analysis