Hb_000414_150

Information

Type -
Description -
Location Contig414: 262258-272270
Sequence    

Annotation

kegg
ID rcu:RCOM_0661530
description mta/sah nucleosidase, putative
nr
ID XP_002529258.1
description mta/sah nucleosidase, putative [Ricinus communis]
swissprot
ID Q9T0I8
description 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 OS=Arabidopsis thaliana GN=MTN1 PE=1 SV=1
trembl
ID B9STD9
description Mta/sah nucleosidase, putative OS=Ricinus communis GN=RCOM_0661530 PE=4 SV=1
Gene Ontology
ID GO:0016798
description 5 -methylthioadenosine s-adenosylhomocysteine nucleosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_150 0.0 - - mta/sah nucleosidase, putative [Ricinus communis]
2 Hb_004241_010 0.2358107631 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_002094_040 0.2408616702 - - Organic cation transporter protein [Aegilops tauschii]
4 Hb_006376_010 0.2449534249 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
5 Hb_001563_020 0.2470568659 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
6 Hb_000111_230 0.2475251636 - - -
7 Hb_005714_050 0.2534873748 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
8 Hb_001022_040 0.2569147115 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
9 Hb_002157_090 0.2624021201 - - hypothetical protein VITISV_041741 [Vitis vinifera]
10 Hb_000136_160 0.2654678842 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_004097_040 0.2685606348 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_117092_010 0.2852358619 - - acyl-CoA oxidase, putative [Ricinus communis]
13 Hb_186158_010 0.2913852409 - - conserved hypothetical protein [Ricinus communis]
14 Hb_032974_010 0.2986562863 - - -
15 Hb_001386_080 0.3053025095 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
16 Hb_000175_580 0.3058883047 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
17 Hb_000025_440 0.3073084016 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
18 Hb_182005_010 0.3145082581 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
19 Hb_002081_170 0.3157177089 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
20 Hb_003158_020 0.3220965294 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]

Gene co-expression network

sample Hb_000414_150 Hb_000414_150 Hb_004241_010 Hb_004241_010 Hb_000414_150--Hb_004241_010 Hb_002094_040 Hb_002094_040 Hb_000414_150--Hb_002094_040 Hb_006376_010 Hb_006376_010 Hb_000414_150--Hb_006376_010 Hb_001563_020 Hb_001563_020 Hb_000414_150--Hb_001563_020 Hb_000111_230 Hb_000111_230 Hb_000414_150--Hb_000111_230 Hb_005714_050 Hb_005714_050 Hb_000414_150--Hb_005714_050 Hb_012379_010 Hb_012379_010 Hb_004241_010--Hb_012379_010 Hb_002157_090 Hb_002157_090 Hb_004241_010--Hb_002157_090 Hb_004241_010--Hb_000111_230 Hb_002259_140 Hb_002259_140 Hb_004241_010--Hb_002259_140 Hb_001584_030 Hb_001584_030 Hb_004241_010--Hb_001584_030 Hb_001386_080 Hb_001386_080 Hb_002094_040--Hb_001386_080 Hb_002997_130 Hb_002997_130 Hb_002094_040--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_002094_040--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_002094_040--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_002094_040--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_002094_040--Hb_000111_160 Hb_000136_160 Hb_000136_160 Hb_006376_010--Hb_000136_160 Hb_004097_040 Hb_004097_040 Hb_006376_010--Hb_004097_040 Hb_006376_010--Hb_002094_040 Hb_000205_200 Hb_000205_200 Hb_006376_010--Hb_000205_200 Hb_044555_010 Hb_044555_010 Hb_006376_010--Hb_044555_010 Hb_001563_020--Hb_002157_090 Hb_001563_020--Hb_001584_030 Hb_002081_170 Hb_002081_170 Hb_001563_020--Hb_002081_170 Hb_000603_010 Hb_000603_010 Hb_001563_020--Hb_000603_010 Hb_001563_020--Hb_004241_010 Hb_069022_010 Hb_069022_010 Hb_000111_230--Hb_069022_010 Hb_000111_230--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_000111_230--Hb_032974_010 Hb_000111_230--Hb_002157_090 Hb_005714_050--Hb_032974_010 Hb_000975_270 Hb_000975_270 Hb_005714_050--Hb_000975_270 Hb_005714_050--Hb_069022_010 Hb_000025_440 Hb_000025_440 Hb_005714_050--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_005714_050--Hb_156503_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0695926 0 0.0871654 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.285909 0.299623 0 0 0

CAGE analysis