Hb_123098_010

Information

Type -
Description -
Location Contig123098: 478-4407
Sequence    

Annotation

kegg
ID tcc:TCM_003698
description DNA/RNA polymerases superfamily protein
nr
ID XP_007050046.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123098_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_028462_010 2.7079e-06 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
3 Hb_004899_270 2.05615e-05 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
4 Hb_000111_160 4.84344e-05 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
5 Hb_018006_020 0.0001098557 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
6 Hb_006053_010 0.0001270844 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_000914_160 0.0001393871 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
8 Hb_007393_010 0.0001583384 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_000413_310 0.0002564434 - - -
10 Hb_000098_160 0.0002691601 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003052_160 0.0002691601 - - -
12 Hb_002130_010 0.0003336359 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
13 Hb_061463_010 0.0003465222 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_002997_130 0.0003669985 - - -
15 Hb_185616_010 0.000383821 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_012543_020 0.0003908151 - - -
17 Hb_000482_130 0.0003951754 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_000510_380 0.0004000679 - - -
19 Hb_000270_820 0.0522371803 - - -
20 Hb_003675_010 0.08361773 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_123098_010 Hb_123098_010 Hb_028462_010 Hb_028462_010 Hb_123098_010--Hb_028462_010 Hb_004899_270 Hb_004899_270 Hb_123098_010--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_123098_010--Hb_000111_160 Hb_018006_020 Hb_018006_020 Hb_123098_010--Hb_018006_020 Hb_006053_010 Hb_006053_010 Hb_123098_010--Hb_006053_010 Hb_000914_160 Hb_000914_160 Hb_123098_010--Hb_000914_160 Hb_028462_010--Hb_004899_270 Hb_028462_010--Hb_000111_160 Hb_028462_010--Hb_018006_020 Hb_028462_010--Hb_006053_010 Hb_028462_010--Hb_000914_160 Hb_004899_270--Hb_000111_160 Hb_004899_270--Hb_018006_020 Hb_004899_270--Hb_006053_010 Hb_004899_270--Hb_000914_160 Hb_000111_160--Hb_018006_020 Hb_000111_160--Hb_006053_010 Hb_000111_160--Hb_000914_160 Hb_018006_020--Hb_006053_010 Hb_018006_020--Hb_000914_160 Hb_007393_010 Hb_007393_010 Hb_018006_020--Hb_007393_010 Hb_006053_010--Hb_000914_160 Hb_006053_010--Hb_007393_010 Hb_000914_160--Hb_007393_010 Hb_000413_310 Hb_000413_310 Hb_000914_160--Hb_000413_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0252733 0.0198887 0 0 0

CAGE analysis