Hb_006053_010

Information

Type -
Description -
Location Contig6053: 17658-18853
Sequence    

Annotation

kegg
ID egr:104431285
description uncharacterized LOC104431285
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A5BKJ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018924 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006053_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_000914_160 1.23027e-05 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
3 Hb_018006_020 1.72286e-05 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
4 Hb_007393_010 3.1254e-05 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
5 Hb_000111_160 7.86499e-05 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
6 Hb_004899_270 0.0001065229 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
7 Hb_123098_010 0.0001270844 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000413_310 0.000129359 - - -
9 Hb_028462_010 0.0001297923 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
10 Hb_000098_160 0.0001420757 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003052_160 0.0001420757 - - -
12 Hb_002130_010 0.0002065515 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
13 Hb_061463_010 0.0002194378 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_185616_010 0.0002567366 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_012543_020 0.0002637307 - - -
16 Hb_000482_130 0.000268091 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_000510_380 0.0002729835 - - -
18 Hb_002997_130 0.0004940828 - - -
19 Hb_000270_820 0.0521102221 - - -
20 Hb_003675_010 0.0835000922 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006053_010 Hb_006053_010 Hb_000914_160 Hb_000914_160 Hb_006053_010--Hb_000914_160 Hb_018006_020 Hb_018006_020 Hb_006053_010--Hb_018006_020 Hb_007393_010 Hb_007393_010 Hb_006053_010--Hb_007393_010 Hb_000111_160 Hb_000111_160 Hb_006053_010--Hb_000111_160 Hb_004899_270 Hb_004899_270 Hb_006053_010--Hb_004899_270 Hb_123098_010 Hb_123098_010 Hb_006053_010--Hb_123098_010 Hb_000914_160--Hb_007393_010 Hb_000914_160--Hb_018006_020 Hb_000914_160--Hb_000111_160 Hb_000413_310 Hb_000413_310 Hb_000914_160--Hb_000413_310 Hb_000914_160--Hb_004899_270 Hb_018006_020--Hb_007393_010 Hb_018006_020--Hb_000111_160 Hb_018006_020--Hb_004899_270 Hb_018006_020--Hb_123098_010 Hb_007393_010--Hb_000413_310 Hb_007393_010--Hb_000111_160 Hb_000098_160 Hb_000098_160 Hb_007393_010--Hb_000098_160 Hb_000111_160--Hb_004899_270 Hb_000111_160--Hb_123098_010 Hb_028462_010 Hb_028462_010 Hb_000111_160--Hb_028462_010 Hb_004899_270--Hb_123098_010 Hb_004899_270--Hb_028462_010 Hb_123098_010--Hb_028462_010 Hb_123098_010--Hb_000914_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529169 0.0416176 0 0 0

CAGE analysis