Hb_000914_160

Information

Type -
Description -
Location Contig914: 146170-150742
Sequence    

Annotation

kegg
ID gmx:102664947
description pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
nr
ID XP_006573428.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
swissprot
ID -
description -
trembl
ID A0A0B2QVE2
description Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=glysoja_035693 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_160 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
2 Hb_006053_010 1.23027e-05 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_007393_010 1.89513e-05 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
4 Hb_018006_020 2.95314e-05 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
5 Hb_000111_160 9.09527e-05 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
6 Hb_000413_310 0.0001170563 - - -
7 Hb_004899_270 0.0001188256 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
8 Hb_000098_160 0.000129773 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003052_160 0.000129773 - - -
10 Hb_123098_010 0.0001393871 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_028462_010 0.0001420951 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
12 Hb_002130_010 0.0001942487 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
13 Hb_061463_010 0.0002071351 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_185616_010 0.0002444339 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_012543_020 0.0002514279 - - -
16 Hb_000482_130 0.0002557882 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_000510_380 0.0002606807 - - -
18 Hb_002997_130 0.0005063856 - - -
19 Hb_000270_820 0.0520979315 - - -
20 Hb_003675_010 0.0834887053 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000914_160 Hb_000914_160 Hb_006053_010 Hb_006053_010 Hb_000914_160--Hb_006053_010 Hb_007393_010 Hb_007393_010 Hb_000914_160--Hb_007393_010 Hb_018006_020 Hb_018006_020 Hb_000914_160--Hb_018006_020 Hb_000111_160 Hb_000111_160 Hb_000914_160--Hb_000111_160 Hb_000413_310 Hb_000413_310 Hb_000914_160--Hb_000413_310 Hb_004899_270 Hb_004899_270 Hb_000914_160--Hb_004899_270 Hb_006053_010--Hb_018006_020 Hb_006053_010--Hb_007393_010 Hb_006053_010--Hb_000111_160 Hb_006053_010--Hb_004899_270 Hb_123098_010 Hb_123098_010 Hb_006053_010--Hb_123098_010 Hb_007393_010--Hb_018006_020 Hb_007393_010--Hb_000413_310 Hb_007393_010--Hb_000111_160 Hb_000098_160 Hb_000098_160 Hb_007393_010--Hb_000098_160 Hb_018006_020--Hb_000111_160 Hb_018006_020--Hb_004899_270 Hb_018006_020--Hb_123098_010 Hb_000111_160--Hb_004899_270 Hb_000111_160--Hb_123098_010 Hb_028462_010 Hb_028462_010 Hb_000111_160--Hb_028462_010 Hb_000413_310--Hb_000098_160 Hb_003052_160 Hb_003052_160 Hb_000413_310--Hb_003052_160 Hb_002130_010 Hb_002130_010 Hb_000413_310--Hb_002130_010 Hb_061463_010 Hb_061463_010 Hb_000413_310--Hb_061463_010 Hb_004899_270--Hb_123098_010 Hb_004899_270--Hb_028462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0566761 0.0445715 0 0 0

CAGE analysis