Hb_061463_010

Information

Type -
Description -
Location Contig61463: 1-463
Sequence    

Annotation

kegg
ID rcu:RCOM_1482960
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID XP_002524250.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID Q39547
description Cucumisin OS=Cucumis melo PE=1 SV=1
trembl
ID B9SE31
description Cucumisin, putative OS=Ricinus communis GN=RCOM_1482960 PE=4 SV=1
Gene Ontology
ID GO:0004252
description cucumisin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061463_010 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_002130_010 1.28864e-05 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_185616_010 3.72988e-05 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_012543_020 4.42928e-05 - - -
5 Hb_000482_130 4.86531e-05 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_000510_380 5.35456e-05 - - -
7 Hb_000098_160 7.73621e-05 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003052_160 7.73621e-05 - - -
9 Hb_000413_310 9.00788e-05 - - -
10 Hb_007393_010 0.0001881838 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
11 Hb_000914_160 0.0002071351 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
12 Hb_006053_010 0.0002194378 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_018006_020 0.0002366665 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
14 Hb_000111_160 0.0002980878 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
15 Hb_004899_270 0.0003259607 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
16 Hb_123098_010 0.0003465222 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_028462_010 0.0003492302 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
18 Hb_002997_130 0.0007135206 - - -
19 Hb_000270_820 0.0518910007 - - -
20 Hb_003675_010 0.0832970267 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_061463_010 Hb_061463_010 Hb_002130_010 Hb_002130_010 Hb_061463_010--Hb_002130_010 Hb_185616_010 Hb_185616_010 Hb_061463_010--Hb_185616_010 Hb_012543_020 Hb_012543_020 Hb_061463_010--Hb_012543_020 Hb_000482_130 Hb_000482_130 Hb_061463_010--Hb_000482_130 Hb_000510_380 Hb_000510_380 Hb_061463_010--Hb_000510_380 Hb_000098_160 Hb_000098_160 Hb_061463_010--Hb_000098_160 Hb_002130_010--Hb_185616_010 Hb_002130_010--Hb_012543_020 Hb_002130_010--Hb_000482_130 Hb_002130_010--Hb_000098_160 Hb_003052_160 Hb_003052_160 Hb_002130_010--Hb_003052_160 Hb_185616_010--Hb_012543_020 Hb_185616_010--Hb_000482_130 Hb_185616_010--Hb_000510_380 Hb_185616_010--Hb_000098_160 Hb_012543_020--Hb_000482_130 Hb_012543_020--Hb_000510_380 Hb_012543_020--Hb_000098_160 Hb_000482_130--Hb_000510_380 Hb_000482_130--Hb_000098_160 Hb_000510_380--Hb_002130_010 Hb_000510_380--Hb_000098_160 Hb_000098_160--Hb_003052_160 Hb_000413_310 Hb_000413_310 Hb_000098_160--Hb_000413_310 Hb_007393_010 Hb_007393_010 Hb_000098_160--Hb_007393_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.233896 0.183761 0 0 0

CAGE analysis