Hb_000482_130

Information

Type -
Description -
Location Contig482: 163726-164322
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_130 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_012543_020 4.3603e-06 - - -
3 Hb_000510_380 4.8925e-06 - - -
4 Hb_185616_010 1.13544e-05 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_061463_010 4.86531e-05 - - Cucumisin precursor, putative [Ricinus communis]
6 Hb_002130_010 6.15395e-05 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
7 Hb_000098_160 0.0001260152 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003052_160 0.0001260152 - - -
9 Hb_000413_310 0.0001387319 - - -
10 Hb_007393_010 0.000236837 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
11 Hb_000914_160 0.0002557882 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
12 Hb_006053_010 0.000268091 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_018006_020 0.0002853196 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
14 Hb_000111_160 0.0003467409 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
15 Hb_004899_270 0.0003746139 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
16 Hb_123098_010 0.0003951754 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_028462_010 0.0003978833 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
18 Hb_002997_130 0.0007621738 - - -
19 Hb_000270_820 0.0518423953 - - -
20 Hb_003675_010 0.0832520141 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000482_130 Hb_000482_130 Hb_012543_020 Hb_012543_020 Hb_000482_130--Hb_012543_020 Hb_000510_380 Hb_000510_380 Hb_000482_130--Hb_000510_380 Hb_185616_010 Hb_185616_010 Hb_000482_130--Hb_185616_010 Hb_061463_010 Hb_061463_010 Hb_000482_130--Hb_061463_010 Hb_002130_010 Hb_002130_010 Hb_000482_130--Hb_002130_010 Hb_000098_160 Hb_000098_160 Hb_000482_130--Hb_000098_160 Hb_012543_020--Hb_185616_010 Hb_012543_020--Hb_000510_380 Hb_012543_020--Hb_061463_010 Hb_012543_020--Hb_002130_010 Hb_012543_020--Hb_000098_160 Hb_000510_380--Hb_185616_010 Hb_000510_380--Hb_061463_010 Hb_000510_380--Hb_002130_010 Hb_000510_380--Hb_000098_160 Hb_185616_010--Hb_061463_010 Hb_185616_010--Hb_002130_010 Hb_185616_010--Hb_000098_160 Hb_061463_010--Hb_002130_010 Hb_061463_010--Hb_000098_160 Hb_002130_010--Hb_000098_160 Hb_003052_160 Hb_003052_160 Hb_002130_010--Hb_003052_160 Hb_000098_160--Hb_003052_160 Hb_000413_310 Hb_000413_310 Hb_000098_160--Hb_000413_310 Hb_007393_010 Hb_007393_010 Hb_000098_160--Hb_007393_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.394763 0.310075 0 0 0

CAGE analysis