Hb_000603_010

Information

Type -
Description -
Location Contig603: 2012-4651
Sequence    

Annotation

kegg
ID tcc:TCM_029171
description Lung seven transmembrane receptor family protein isoform 1
nr
ID XP_010273861.1
description PREDICTED: transmembrane protein 87A-like [Nelumbo nucifera]
swissprot
ID Q28EW0
description Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1
trembl
ID A0A0B0P1M4
description Transmembrane 87A OS=Gossypium arboreum GN=F383_25770 PE=4 SV=1
Gene Ontology
ID GO:0005794
description transmembrane protein 87a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_010 0.0 - - PREDICTED: transmembrane protein 87A-like [Nelumbo nucifera]
2 Hb_001584_030 0.1684877493 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
3 Hb_001355_120 0.1897189957 - - cytochrome P450, putative [Ricinus communis]
4 Hb_004158_100 0.2100981297 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
5 Hb_002874_020 0.2198333899 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105637459 isoform X1 [Jatropha curcas]
6 Hb_001563_020 0.2431146879 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
7 Hb_133661_010 0.271280829 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
8 Hb_002157_090 0.2717237511 - - hypothetical protein VITISV_041741 [Vitis vinifera]
9 Hb_001828_100 0.2755989386 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
10 Hb_000261_170 0.2829550896 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_118094_010 0.2908391955 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
12 Hb_001514_260 0.2916956577 - - -
13 Hb_092233_010 0.3029577138 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
14 Hb_004200_030 0.3129280315 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
15 Hb_001277_060 0.3166328894 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
16 Hb_001269_250 0.3194515758 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
17 Hb_005045_050 0.321527619 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
18 Hb_000329_260 0.3235306607 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
19 Hb_004241_010 0.3275486235 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_020259_020 0.3282668287 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000603_010 Hb_000603_010 Hb_001584_030 Hb_001584_030 Hb_000603_010--Hb_001584_030 Hb_001355_120 Hb_001355_120 Hb_000603_010--Hb_001355_120 Hb_004158_100 Hb_004158_100 Hb_000603_010--Hb_004158_100 Hb_002874_020 Hb_002874_020 Hb_000603_010--Hb_002874_020 Hb_001563_020 Hb_001563_020 Hb_000603_010--Hb_001563_020 Hb_133661_010 Hb_133661_010 Hb_000603_010--Hb_133661_010 Hb_002157_090 Hb_002157_090 Hb_001584_030--Hb_002157_090 Hb_001584_030--Hb_001563_020 Hb_004241_010 Hb_004241_010 Hb_001584_030--Hb_004241_010 Hb_001584_030--Hb_133661_010 Hb_001584_030--Hb_001355_120 Hb_001355_120--Hb_004158_100 Hb_000261_170 Hb_000261_170 Hb_001355_120--Hb_000261_170 Hb_000649_340 Hb_000649_340 Hb_001355_120--Hb_000649_340 Hb_001355_120--Hb_133661_010 Hb_118094_010 Hb_118094_010 Hb_004158_100--Hb_118094_010 Hb_004158_100--Hb_000261_170 Hb_001828_100 Hb_001828_100 Hb_004158_100--Hb_001828_100 Hb_004158_100--Hb_001584_030 Hb_002874_020--Hb_001584_030 Hb_002874_020--Hb_001355_120 Hb_000109_230 Hb_000109_230 Hb_002874_020--Hb_000109_230 Hb_001514_260 Hb_001514_260 Hb_002874_020--Hb_001514_260 Hb_001431_100 Hb_001431_100 Hb_002874_020--Hb_001431_100 Hb_001563_020--Hb_002157_090 Hb_002081_170 Hb_002081_170 Hb_001563_020--Hb_002081_170 Hb_000414_150 Hb_000414_150 Hb_001563_020--Hb_000414_150 Hb_001563_020--Hb_004241_010 Hb_133661_010--Hb_118094_010 Hb_133661_010--Hb_002157_090 Hb_133661_010--Hb_000261_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0246144 0.0206458 0.267267 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0922707 0.0967898 0 0 0

CAGE analysis