Hb_118094_010

Information

Type -
Description -
Location Contig118094: 1-1889
Sequence    

Annotation

kegg
ID pop:POPTR_0011s06595g
description hypothetical protein
nr
ID XP_006377514.1
description hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
swissprot
ID Q9ASQ6
description Probable LRR receptor-like serine/threonine-protein kinase At1g29720 OS=Arabidopsis thaliana GN=RFK1 PE=2 SV=3
trembl
ID U5FZB5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s06595g PE=4 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase rlpk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118094_010 0.0 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
2 Hb_005363_010 0.1700173205 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
3 Hb_004158_100 0.2111611175 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
4 Hb_001507_030 0.2279546015 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
5 Hb_001221_520 0.2342159678 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000318_080 0.2365461351 - - PREDICTED: la-related protein 6C [Jatropha curcas]
7 Hb_015586_010 0.2382716916 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
8 Hb_000307_120 0.2436160547 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
9 Hb_005045_050 0.2447696121 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
10 Hb_001584_030 0.2454857441 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
11 Hb_003687_030 0.2507038756 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_003020_180 0.2530972948 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
13 Hb_002157_090 0.2559416226 - - hypothetical protein VITISV_041741 [Vitis vinifera]
14 Hb_000007_200 0.2636311249 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
15 Hb_000418_080 0.2653682577 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
16 Hb_133661_010 0.2655920003 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
17 Hb_001563_020 0.2700989657 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
18 Hb_003911_030 0.2739086764 - - glutamate dehydrogenase, putative [Ricinus communis]
19 Hb_000886_030 0.275154375 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
20 Hb_124996_010 0.2764229965 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]

Gene co-expression network

sample Hb_118094_010 Hb_118094_010 Hb_005363_010 Hb_005363_010 Hb_118094_010--Hb_005363_010 Hb_004158_100 Hb_004158_100 Hb_118094_010--Hb_004158_100 Hb_001507_030 Hb_001507_030 Hb_118094_010--Hb_001507_030 Hb_001221_520 Hb_001221_520 Hb_118094_010--Hb_001221_520 Hb_000318_080 Hb_000318_080 Hb_118094_010--Hb_000318_080 Hb_015586_010 Hb_015586_010 Hb_118094_010--Hb_015586_010 Hb_005363_010--Hb_001221_520 Hb_005363_010--Hb_001507_030 Hb_001999_240 Hb_001999_240 Hb_005363_010--Hb_001999_240 Hb_003020_180 Hb_003020_180 Hb_005363_010--Hb_003020_180 Hb_004899_310 Hb_004899_310 Hb_005363_010--Hb_004899_310 Hb_001355_120 Hb_001355_120 Hb_004158_100--Hb_001355_120 Hb_000603_010 Hb_000603_010 Hb_004158_100--Hb_000603_010 Hb_000261_170 Hb_000261_170 Hb_004158_100--Hb_000261_170 Hb_001828_100 Hb_001828_100 Hb_004158_100--Hb_001828_100 Hb_001584_030 Hb_001584_030 Hb_004158_100--Hb_001584_030 Hb_001511_190 Hb_001511_190 Hb_001507_030--Hb_001511_190 Hb_005663_070 Hb_005663_070 Hb_001507_030--Hb_005663_070 Hb_001944_020 Hb_001944_020 Hb_001507_030--Hb_001944_020 Hb_001507_030--Hb_003020_180 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_002759_260 Hb_002759_260 Hb_001507_030--Hb_002759_260 Hb_009557_050 Hb_009557_050 Hb_001221_520--Hb_009557_050 Hb_004241_200 Hb_004241_200 Hb_001221_520--Hb_004241_200 Hb_008406_030 Hb_008406_030 Hb_001221_520--Hb_008406_030 Hb_001221_520--Hb_001507_030 Hb_005227_050 Hb_005227_050 Hb_001221_520--Hb_005227_050 Hb_052764_070 Hb_052764_070 Hb_000318_080--Hb_052764_070 Hb_097218_020 Hb_097218_020 Hb_000318_080--Hb_097218_020 Hb_000007_200 Hb_000007_200 Hb_000318_080--Hb_000007_200 Hb_001767_060 Hb_001767_060 Hb_000318_080--Hb_001767_060 Hb_000886_030 Hb_000886_030 Hb_000318_080--Hb_000886_030 Hb_090065_010 Hb_090065_010 Hb_015586_010--Hb_090065_010 Hb_015586_010--Hb_001584_030 Hb_002157_090 Hb_002157_090 Hb_015586_010--Hb_002157_090 Hb_001959_250 Hb_001959_250 Hb_015586_010--Hb_001959_250 Hb_009976_010 Hb_009976_010 Hb_015586_010--Hb_009976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235883 6.37866 1.63637 12.7207 0 0.0129541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.85636 7.51978 0.34733 0.814568 1.7676

CAGE analysis