Hb_003020_180

Information

Type -
Description -
Location Contig3020: 116489-118681
Sequence    

Annotation

kegg
ID tcc:TCM_041761
description Highly ABA-induced PP2C gene 2 isoform 1
nr
ID XP_012066955.1
description PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
swissprot
ID Q9ZW21
description Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1
trembl
ID A0A067LDT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02934 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31849: 116645-118553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_180 0.0 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
2 Hb_001507_030 0.1687492451 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
3 Hb_002639_100 0.1748297136 - - dehydrin [Hevea brasiliensis]
4 Hb_006935_010 0.191404911 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
5 Hb_005779_030 0.1921675675 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
6 Hb_000627_090 0.2039135568 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003687_030 0.2063284788 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_001511_190 0.2075432822 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
9 Hb_172632_050 0.2127113623 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
10 Hb_005363_010 0.2140088677 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
11 Hb_001818_060 0.2142446743 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
12 Hb_001944_020 0.218402529 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
13 Hb_012107_010 0.2199872547 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
14 Hb_000891_030 0.2235924738 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
15 Hb_001433_140 0.2273650376 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
16 Hb_000059_300 0.2278198566 - - caspase, putative [Ricinus communis]
17 Hb_000426_030 0.2285888518 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
18 Hb_003747_210 0.228597489 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
19 Hb_004837_150 0.2289775566 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
20 Hb_005663_070 0.2304955139 - - dehydrin protein [Manihot esculenta]

Gene co-expression network

sample Hb_003020_180 Hb_003020_180 Hb_001507_030 Hb_001507_030 Hb_003020_180--Hb_001507_030 Hb_002639_100 Hb_002639_100 Hb_003020_180--Hb_002639_100 Hb_006935_010 Hb_006935_010 Hb_003020_180--Hb_006935_010 Hb_005779_030 Hb_005779_030 Hb_003020_180--Hb_005779_030 Hb_000627_090 Hb_000627_090 Hb_003020_180--Hb_000627_090 Hb_003687_030 Hb_003687_030 Hb_003020_180--Hb_003687_030 Hb_001511_190 Hb_001511_190 Hb_001507_030--Hb_001511_190 Hb_005663_070 Hb_005663_070 Hb_001507_030--Hb_005663_070 Hb_001944_020 Hb_001944_020 Hb_001507_030--Hb_001944_020 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_002759_260 Hb_002759_260 Hb_001507_030--Hb_002759_260 Hb_002639_100--Hb_006935_010 Hb_002053_130 Hb_002053_130 Hb_002639_100--Hb_002053_130 Hb_012107_010 Hb_012107_010 Hb_002639_100--Hb_012107_010 Hb_002572_050 Hb_002572_050 Hb_002639_100--Hb_002572_050 Hb_000038_040 Hb_000038_040 Hb_002639_100--Hb_000038_040 Hb_003747_210 Hb_003747_210 Hb_002639_100--Hb_003747_210 Hb_006935_010--Hb_000038_040 Hb_006846_020 Hb_006846_020 Hb_006935_010--Hb_006846_020 Hb_001049_160 Hb_001049_160 Hb_006935_010--Hb_001049_160 Hb_007382_100 Hb_007382_100 Hb_006935_010--Hb_007382_100 Hb_018790_080 Hb_018790_080 Hb_006935_010--Hb_018790_080 Hb_009646_010 Hb_009646_010 Hb_005779_030--Hb_009646_010 Hb_000059_300 Hb_000059_300 Hb_005779_030--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_005779_030--Hb_000110_300 Hb_000465_260 Hb_000465_260 Hb_005779_030--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_005779_030--Hb_001818_060 Hb_128589_010 Hb_128589_010 Hb_005779_030--Hb_128589_010 Hb_001246_120 Hb_001246_120 Hb_000627_090--Hb_001246_120 Hb_000627_090--Hb_018790_080 Hb_004218_120 Hb_004218_120 Hb_000627_090--Hb_004218_120 Hb_000627_090--Hb_001507_030 Hb_002431_010 Hb_002431_010 Hb_000627_090--Hb_002431_010 Hb_001675_030 Hb_001675_030 Hb_003687_030--Hb_001675_030 Hb_000886_030 Hb_000886_030 Hb_003687_030--Hb_000886_030 Hb_001728_020 Hb_001728_020 Hb_003687_030--Hb_001728_020 Hb_172632_050 Hb_172632_050 Hb_003687_030--Hb_172632_050 Hb_028707_070 Hb_028707_070 Hb_003687_030--Hb_028707_070 Hb_000529_280 Hb_000529_280 Hb_003687_030--Hb_000529_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56806 29.0738 3.81444 22.0261 0.300601 1.56365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.85375 13.2416 1.32157 7.36574 4.20692

CAGE analysis