Hb_002431_010

Information

Type -
Description -
Location Contig2431: 66693-70369
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20790g
description POPTRDRAFT_559313; ACT domain-containing family protein
nr
ID XP_010260456.1
description PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
swissprot
ID O49285
description ACT domain-containing protein ACR3 OS=Arabidopsis thaliana GN=ACR3 PE=2 SV=1
trembl
ID B9H7L7
description ACT domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s20790g PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002431_010 0.0 - - PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
2 Hb_012258_020 0.1667649075 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_003835_090 0.1718680917 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
4 Hb_006711_070 0.1945948103 - - hypothetical protein RCOM_1336320 [Ricinus communis]
5 Hb_055488_020 0.1962602849 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
6 Hb_030312_010 0.198721689 - - conserved hypothetical protein [Ricinus communis]
7 Hb_170674_010 0.2006085775 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
8 Hb_002311_140 0.2049817431 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
9 Hb_001486_020 0.2070904412 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
10 Hb_000117_060 0.208325703 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
11 Hb_002701_210 0.2085995062 - - Protein COBRA precursor, putative [Ricinus communis]
12 Hb_063716_090 0.2087218193 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000627_090 0.2090319352 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001758_130 0.212199118 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
15 Hb_003097_120 0.2159208583 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
16 Hb_001769_110 0.2159276409 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
17 Hb_041895_040 0.2174341788 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003078_030 0.2176521045 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
19 Hb_000029_410 0.2199279663 - - AT14A, putative [Ricinus communis]
20 Hb_006745_010 0.2200559004 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]

Gene co-expression network

sample Hb_002431_010 Hb_002431_010 Hb_012258_020 Hb_012258_020 Hb_002431_010--Hb_012258_020 Hb_003835_090 Hb_003835_090 Hb_002431_010--Hb_003835_090 Hb_006711_070 Hb_006711_070 Hb_002431_010--Hb_006711_070 Hb_055488_020 Hb_055488_020 Hb_002431_010--Hb_055488_020 Hb_030312_010 Hb_030312_010 Hb_002431_010--Hb_030312_010 Hb_170674_010 Hb_170674_010 Hb_002431_010--Hb_170674_010 Hb_000117_060 Hb_000117_060 Hb_012258_020--Hb_000117_060 Hb_005568_130 Hb_005568_130 Hb_012258_020--Hb_005568_130 Hb_041895_040 Hb_041895_040 Hb_012258_020--Hb_041895_040 Hb_003637_020 Hb_003637_020 Hb_012258_020--Hb_003637_020 Hb_000594_110 Hb_000594_110 Hb_012258_020--Hb_000594_110 Hb_001518_060 Hb_001518_060 Hb_012258_020--Hb_001518_060 Hb_003835_090--Hb_006711_070 Hb_003305_030 Hb_003305_030 Hb_003835_090--Hb_003305_030 Hb_003835_090--Hb_055488_020 Hb_003835_090--Hb_041895_040 Hb_003835_090--Hb_012258_020 Hb_001486_020 Hb_001486_020 Hb_003835_090--Hb_001486_020 Hb_006711_070--Hb_000117_060 Hb_003078_030 Hb_003078_030 Hb_006711_070--Hb_003078_030 Hb_000134_340 Hb_000134_340 Hb_006711_070--Hb_000134_340 Hb_005096_010 Hb_005096_010 Hb_006711_070--Hb_005096_010 Hb_138585_100 Hb_138585_100 Hb_006711_070--Hb_138585_100 Hb_021443_090 Hb_021443_090 Hb_006711_070--Hb_021443_090 Hb_002701_210 Hb_002701_210 Hb_055488_020--Hb_002701_210 Hb_055488_020--Hb_003078_030 Hb_000012_210 Hb_000012_210 Hb_055488_020--Hb_000012_210 Hb_001009_090 Hb_001009_090 Hb_055488_020--Hb_001009_090 Hb_055488_020--Hb_005096_010 Hb_000056_300 Hb_000056_300 Hb_055488_020--Hb_000056_300 Hb_003082_040 Hb_003082_040 Hb_030312_010--Hb_003082_040 Hb_000094_190 Hb_000094_190 Hb_030312_010--Hb_000094_190 Hb_063716_090 Hb_063716_090 Hb_030312_010--Hb_063716_090 Hb_001255_010 Hb_001255_010 Hb_030312_010--Hb_001255_010 Hb_000797_060 Hb_000797_060 Hb_030312_010--Hb_000797_060 Hb_001004_120 Hb_001004_120 Hb_030312_010--Hb_001004_120 Hb_085364_010 Hb_085364_010 Hb_170674_010--Hb_085364_010 Hb_001484_100 Hb_001484_100 Hb_170674_010--Hb_001484_100 Hb_002311_140 Hb_002311_140 Hb_170674_010--Hb_002311_140 Hb_003640_020 Hb_003640_020 Hb_170674_010--Hb_003640_020 Hb_170674_010--Hb_003078_030 Hb_000179_180 Hb_000179_180 Hb_170674_010--Hb_000179_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225731 1.10939 0.446138 0.987102 0.461937 0.139098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.166767 0.19681 0.0412363 0.026152 0.0918646

CAGE analysis