Hb_001518_060

Information

Type transcription factor
Description TF Family: SBP
Location Contig1518: 37768-44533
Sequence    

Annotation

kegg
ID rcu:RCOM_0413690
description LIGULELESS1 protein, putative
nr
ID XP_012087743.1
description PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
swissprot
ID Q700W2
description Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2
trembl
ID B9T274
description LIGULELESS1 protein, putative OS=Ricinus communis GN=RCOM_0413690 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12910: 37869-38083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001518_060 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
2 Hb_012258_020 0.1631541918 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_010315_100 0.1663634278 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
4 Hb_178793_010 0.1709737521 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
5 Hb_005724_050 0.1739500271 - - -
6 Hb_041895_040 0.1740158938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000594_110 0.1754315579 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
8 Hb_001255_010 0.1792713962 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
9 Hb_000732_230 0.1798015869 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
10 Hb_018691_020 0.1822695078 - - -
11 Hb_028487_130 0.1833835563 - - kinase family protein [Populus trichocarpa]
12 Hb_001102_090 0.1856669908 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
13 Hb_102437_010 0.1880005996 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
14 Hb_030312_010 0.1896264333 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005568_130 0.1897620569 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
16 Hb_005000_050 0.1898517614 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
17 Hb_002250_050 0.1902180148 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
18 Hb_000363_180 0.1903015835 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
19 Hb_000732_240 0.1915619028 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
20 Hb_053519_010 0.1915695914 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]

Gene co-expression network

sample Hb_001518_060 Hb_001518_060 Hb_012258_020 Hb_012258_020 Hb_001518_060--Hb_012258_020 Hb_010315_100 Hb_010315_100 Hb_001518_060--Hb_010315_100 Hb_178793_010 Hb_178793_010 Hb_001518_060--Hb_178793_010 Hb_005724_050 Hb_005724_050 Hb_001518_060--Hb_005724_050 Hb_041895_040 Hb_041895_040 Hb_001518_060--Hb_041895_040 Hb_000594_110 Hb_000594_110 Hb_001518_060--Hb_000594_110 Hb_000117_060 Hb_000117_060 Hb_012258_020--Hb_000117_060 Hb_005568_130 Hb_005568_130 Hb_012258_020--Hb_005568_130 Hb_012258_020--Hb_041895_040 Hb_003637_020 Hb_003637_020 Hb_012258_020--Hb_003637_020 Hb_012258_020--Hb_000594_110 Hb_000363_180 Hb_000363_180 Hb_010315_100--Hb_000363_180 Hb_002235_370 Hb_002235_370 Hb_010315_100--Hb_002235_370 Hb_002539_050 Hb_002539_050 Hb_010315_100--Hb_002539_050 Hb_003849_120 Hb_003849_120 Hb_010315_100--Hb_003849_120 Hb_186247_010 Hb_186247_010 Hb_010315_100--Hb_186247_010 Hb_000196_010 Hb_000196_010 Hb_010315_100--Hb_000196_010 Hb_018691_020 Hb_018691_020 Hb_178793_010--Hb_018691_020 Hb_028487_130 Hb_028487_130 Hb_178793_010--Hb_028487_130 Hb_002849_070 Hb_002849_070 Hb_178793_010--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_178793_010--Hb_000200_170 Hb_005000_050 Hb_005000_050 Hb_178793_010--Hb_005000_050 Hb_000920_220 Hb_000920_220 Hb_178793_010--Hb_000920_220 Hb_000008_430 Hb_000008_430 Hb_005724_050--Hb_000008_430 Hb_001409_050 Hb_001409_050 Hb_005724_050--Hb_001409_050 Hb_000732_230 Hb_000732_230 Hb_005724_050--Hb_000732_230 Hb_001205_180 Hb_001205_180 Hb_005724_050--Hb_001205_180 Hb_001951_240 Hb_001951_240 Hb_005724_050--Hb_001951_240 Hb_002609_190 Hb_002609_190 Hb_005724_050--Hb_002609_190 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_015026_040 Hb_015026_040 Hb_041895_040--Hb_015026_040 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_041895_040--Hb_000594_110 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_033327_010 Hb_033327_010 Hb_000594_110--Hb_033327_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.211041 1.85431 1.2375 1.59313 0.649773 0.332828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167803 0.0329985 0 0.462904 0.272735

CAGE analysis