Hb_003637_020

Information

Type -
Description -
Location Contig3637: 32260-40274
Sequence    

Annotation

kegg
ID rcu:RCOM_0885060
description hypothetical protein
nr
ID XP_002522627.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9F8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003637_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_185513_010 0.0928955579 - - conserved hypothetical protein [Ricinus communis]
3 Hb_103788_010 0.0988487624 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_000117_060 0.1111343473 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
5 Hb_003752_120 0.1348740438 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
6 Hb_012725_040 0.1372196386 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_012258_020 0.1423888605 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_005568_130 0.1439513978 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
9 Hb_012787_040 0.1450894478 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
10 Hb_000342_140 0.1492714111 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
11 Hb_056012_010 0.1499176244 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
12 Hb_006711_070 0.1506674085 - - hypothetical protein RCOM_1336320 [Ricinus communis]
13 Hb_158696_010 0.1534955619 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
14 Hb_001662_170 0.155690124 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
15 Hb_003913_030 0.1583711099 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
16 Hb_138585_100 0.1594255742 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
17 Hb_000336_190 0.1612765018 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
18 Hb_000270_770 0.1620836537 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
19 Hb_006054_030 0.1632019622 - - PREDICTED: protein GPR107-like [Jatropha curcas]
20 Hb_004106_010 0.1651858373 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003637_020 Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_003637_020--Hb_185513_010 Hb_103788_010 Hb_103788_010 Hb_003637_020--Hb_103788_010 Hb_000117_060 Hb_000117_060 Hb_003637_020--Hb_000117_060 Hb_003752_120 Hb_003752_120 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_012258_020 Hb_012258_020 Hb_003637_020--Hb_012258_020 Hb_185513_010--Hb_012725_040 Hb_185513_010--Hb_103788_010 Hb_056012_010 Hb_056012_010 Hb_185513_010--Hb_056012_010 Hb_185513_010--Hb_000117_060 Hb_001865_060 Hb_001865_060 Hb_185513_010--Hb_001865_060 Hb_103788_010--Hb_003752_120 Hb_002915_070 Hb_002915_070 Hb_103788_010--Hb_002915_070 Hb_006054_030 Hb_006054_030 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080 Hb_006711_070 Hb_006711_070 Hb_000117_060--Hb_006711_070 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_000117_060--Hb_012258_020 Hb_138585_100 Hb_138585_100 Hb_000117_060--Hb_138585_100 Hb_012787_040 Hb_012787_040 Hb_003752_120--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_003752_120--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_003752_120--Hb_001662_170 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_012725_040--Hb_001865_060 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_001258_150 Hb_001258_150 Hb_012725_040--Hb_001258_150 Hb_003494_060 Hb_003494_060 Hb_012725_040--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_012725_040--Hb_001141_360 Hb_005568_130 Hb_005568_130 Hb_012258_020--Hb_005568_130 Hb_041895_040 Hb_041895_040 Hb_012258_020--Hb_041895_040 Hb_000594_110 Hb_000594_110 Hb_012258_020--Hb_000594_110 Hb_001518_060 Hb_001518_060 Hb_012258_020--Hb_001518_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.38702 35.0047 6.74179 16.8915 3.40498 6.62091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59573 1.99144 1.34741 4.45206 2.45601

CAGE analysis