Hb_000594_110

Information

Type transcription factor
Description TF Family: RAV
Location Contig594: 158378-159484
Sequence    

Annotation

kegg
ID rcu:RCOM_0705620
description DNA-binding protein RAV1, putative
nr
ID XP_002524409.1
description DNA-binding protein RAV1, putative [Ricinus communis]
swissprot
ID Q9C6M5
description AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1
trembl
ID B9SEJ0
description DNA-binding protein RAV1, putative OS=Ricinus communis GN=RCOM_0705620 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2 erf and b3 domain-containing transcription factor rav1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50336: 158259-159543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_110 0.0 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
2 Hb_041895_040 0.1353900441 - - conserved hypothetical protein [Ricinus communis]
3 Hb_102437_010 0.1360096017 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
4 Hb_033327_010 0.1361277907 - - SYM8 [Pisum sativum]
5 Hb_000340_560 0.1375959955 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002311_150 0.1405005895 - - Protein COBRA precursor, putative [Ricinus communis]
7 Hb_002233_080 0.1444606973 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
8 Hb_000284_170 0.1505110123 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
9 Hb_005048_120 0.1528986798 - - -
10 Hb_012258_020 0.1602774305 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_001246_160 0.163259899 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
12 Hb_001329_080 0.1642077947 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
13 Hb_002122_030 0.1643703118 - - -
14 Hb_001357_280 0.1646204768 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
15 Hb_001019_020 0.1664382602 - - conserved hypothetical protein [Ricinus communis]
16 Hb_094437_050 0.1664956599 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
17 Hb_012272_010 0.1678526635 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_000805_040 0.1692147539 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
19 Hb_000532_150 0.1699088384 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
20 Hb_004712_160 0.1703391538 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]

Gene co-expression network

sample Hb_000594_110 Hb_000594_110 Hb_041895_040 Hb_041895_040 Hb_000594_110--Hb_041895_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_033327_010 Hb_033327_010 Hb_000594_110--Hb_033327_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_015026_040 Hb_015026_040 Hb_041895_040--Hb_015026_040 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_102437_010--Hb_041895_040 Hb_000003_740 Hb_000003_740 Hb_102437_010--Hb_000003_740 Hb_102437_010--Hb_005394_010 Hb_182249_010 Hb_182249_010 Hb_102437_010--Hb_182249_010 Hb_012258_020 Hb_012258_020 Hb_102437_010--Hb_012258_020 Hb_000284_170 Hb_000284_170 Hb_033327_010--Hb_000284_170 Hb_007120_010 Hb_007120_010 Hb_033327_010--Hb_007120_010 Hb_005048_120 Hb_005048_120 Hb_033327_010--Hb_005048_120 Hb_000284_180 Hb_000284_180 Hb_033327_010--Hb_000284_180 Hb_010142_040 Hb_010142_040 Hb_033327_010--Hb_010142_040 Hb_033053_010 Hb_033053_010 Hb_000340_560--Hb_033053_010 Hb_000340_560--Hb_001246_160 Hb_017857_010 Hb_017857_010 Hb_000340_560--Hb_017857_010 Hb_164926_050 Hb_164926_050 Hb_000340_560--Hb_164926_050 Hb_002122_030 Hb_002122_030 Hb_000340_560--Hb_002122_030 Hb_000805_040 Hb_000805_040 Hb_002311_150--Hb_000805_040 Hb_004586_130 Hb_004586_130 Hb_002311_150--Hb_004586_130 Hb_094437_050 Hb_094437_050 Hb_002311_150--Hb_094437_050 Hb_000680_180 Hb_000680_180 Hb_002311_150--Hb_000680_180 Hb_000373_250 Hb_000373_250 Hb_002311_150--Hb_000373_250 Hb_001019_020 Hb_001019_020 Hb_002233_080--Hb_001019_020 Hb_076771_010 Hb_076771_010 Hb_002233_080--Hb_076771_010 Hb_001675_310 Hb_001675_310 Hb_002233_080--Hb_001675_310 Hb_012272_010 Hb_012272_010 Hb_002233_080--Hb_012272_010 Hb_004297_080 Hb_004297_080 Hb_002233_080--Hb_004297_080 Hb_002233_080--Hb_094437_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2147 165.168 135.639 138.058 18.5116 17.2811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.17095 9.63738 1.10748 14.3804 14.0546

CAGE analysis