Hb_001769_110

Information

Type -
Description -
Location Contig1769: 84864-87489
Sequence    

Annotation

kegg
ID rcu:RCOM_1587370
description oligopeptide transporter, putative
nr
ID XP_012068217.1
description PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
swissprot
ID Q9LUN2
description Probable metal-nicotianamine transporter YSL5 OS=Arabidopsis thaliana GN=YSL5 PE=1 SV=1
trembl
ID B9R700
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_1587370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16983: 85748-86516 , PASA_asmbl_16984: 86799-87186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_110 0.0 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
2 Hb_041895_040 0.1330532626 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000445_100 0.1357221126 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
4 Hb_007253_010 0.1400021648 - - syntaxin, putative [Ricinus communis]
5 Hb_000749_070 0.1463039069 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_159809_050 0.150139751 - - AT14A, putative [Ricinus communis]
7 Hb_015026_040 0.1546200316 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
8 Hb_001246_160 0.1570025863 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
9 Hb_004631_200 0.1639140755 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002122_030 0.1639380783 - - -
11 Hb_013358_020 0.1688408491 - - ccr4-associated factor, putative [Ricinus communis]
12 Hb_004994_250 0.1689275251 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
13 Hb_000029_410 0.1757203368 - - AT14A, putative [Ricinus communis]
14 Hb_005714_100 0.1801928596 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
15 Hb_002685_200 0.1822714288 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
16 Hb_002701_210 0.18399647 - - Protein COBRA precursor, putative [Ricinus communis]
17 Hb_001396_120 0.1844954588 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
18 Hb_003305_030 0.1846277697 - - -
19 Hb_003776_040 0.1883075648 - - PREDICTED: RING finger protein 165-like isoform X2 [Populus euphratica]
20 Hb_000221_230 0.1883238206 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]

Gene co-expression network

sample Hb_001769_110 Hb_001769_110 Hb_041895_040 Hb_041895_040 Hb_001769_110--Hb_041895_040 Hb_000445_100 Hb_000445_100 Hb_001769_110--Hb_000445_100 Hb_007253_010 Hb_007253_010 Hb_001769_110--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_001769_110--Hb_000749_070 Hb_159809_050 Hb_159809_050 Hb_001769_110--Hb_159809_050 Hb_015026_040 Hb_015026_040 Hb_001769_110--Hb_015026_040 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_041895_040--Hb_015026_040 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110 Hb_000445_100--Hb_015026_040 Hb_000445_100--Hb_159809_050 Hb_000421_230 Hb_000421_230 Hb_000445_100--Hb_000421_230 Hb_000445_100--Hb_000749_070 Hb_090782_010 Hb_090782_010 Hb_000445_100--Hb_090782_010 Hb_003581_280 Hb_003581_280 Hb_000445_100--Hb_003581_280 Hb_007253_010--Hb_159809_050 Hb_007253_010--Hb_000749_070 Hb_013358_020 Hb_013358_020 Hb_007253_010--Hb_013358_020 Hb_004117_170 Hb_004117_170 Hb_007253_010--Hb_004117_170 Hb_000035_050 Hb_000035_050 Hb_007253_010--Hb_000035_050 Hb_018790_050 Hb_018790_050 Hb_007253_010--Hb_018790_050 Hb_000749_070--Hb_013358_020 Hb_000749_070--Hb_001246_160 Hb_000749_070--Hb_159809_050 Hb_000749_070--Hb_004117_170 Hb_000749_070--Hb_000035_050 Hb_159809_050--Hb_013358_020 Hb_159809_050--Hb_003581_280 Hb_159809_050--Hb_000035_050 Hb_001135_030 Hb_001135_030 Hb_159809_050--Hb_001135_030 Hb_000221_230 Hb_000221_230 Hb_015026_040--Hb_000221_230 Hb_015026_040--Hb_005394_010 Hb_015026_040--Hb_090782_010 Hb_008020_020 Hb_008020_020 Hb_015026_040--Hb_008020_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176914 1.69893 1.54601 1.13844 0.314043 0.149028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.503996 0.250443 0.0788174 0.141366 0.0878042

CAGE analysis