Hb_041895_040

Information

Type -
Description -
Location Contig41895: 18335-18811
Sequence    

Annotation

kegg
ID rcu:RCOM_0455450
description hypothetical protein
nr
ID XP_002529493.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU24
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0455450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41381: 18145-18490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041895_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005394_010 0.0949169227 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
3 Hb_015026_040 0.101333454 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
4 Hb_001246_160 0.114869441 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_000163_230 0.1307601449 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
6 Hb_001769_110 0.1330532626 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
7 Hb_000594_110 0.1353900441 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
8 Hb_000009_200 0.1357430883 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
9 Hb_102437_010 0.1366254884 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
10 Hb_000445_100 0.1367934125 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
11 Hb_012258_020 0.1370597074 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_000671_060 0.1389030271 - - protein binding protein, putative [Ricinus communis]
13 Hb_000221_230 0.1389884655 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
14 Hb_003305_030 0.143727672 - - -
15 Hb_002122_030 0.1449606688 - - -
16 Hb_090782_010 0.1464938194 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
17 Hb_005714_100 0.1472333479 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
18 Hb_000749_070 0.1493329513 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
19 Hb_159809_050 0.1500734769 - - AT14A, putative [Ricinus communis]
20 Hb_001102_090 0.1535364321 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_041895_040 Hb_041895_040 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_015026_040 Hb_015026_040 Hb_041895_040--Hb_015026_040 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110 Hb_011671_110 Hb_011671_110 Hb_005394_010--Hb_011671_110 Hb_005394_010--Hb_001246_160 Hb_047442_010 Hb_047442_010 Hb_005394_010--Hb_047442_010 Hb_005394_010--Hb_015026_040 Hb_005394_010--Hb_000163_230 Hb_000221_230 Hb_000221_230 Hb_015026_040--Hb_000221_230 Hb_000445_100 Hb_000445_100 Hb_015026_040--Hb_000445_100 Hb_090782_010 Hb_090782_010 Hb_015026_040--Hb_090782_010 Hb_008020_020 Hb_008020_020 Hb_015026_040--Hb_008020_020 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_000009_200 Hb_000009_200 Hb_001246_160--Hb_000009_200 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_001246_160--Hb_056196_060 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_001009_090 Hb_001009_090 Hb_000163_230--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000163_230--Hb_000045_260 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000186_200 Hb_000186_200 Hb_000163_230--Hb_000186_200 Hb_001769_110--Hb_000445_100 Hb_007253_010 Hb_007253_010 Hb_001769_110--Hb_007253_010 Hb_001769_110--Hb_000749_070 Hb_159809_050 Hb_159809_050 Hb_001769_110--Hb_159809_050 Hb_001769_110--Hb_015026_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_033327_010 Hb_033327_010 Hb_000594_110--Hb_033327_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.92066 51.1194 47.5239 35.3063 8.87599 10.4984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.11335 4.56151 2.29499 6.14443 6.53681

CAGE analysis