Hb_010142_040

Information

Type -
Description -
Location Contig10142: 34834-35268
Sequence    

Annotation

kegg
ID rcu:RCOM_1037520
description protein binding protein, putative
nr
ID XP_012067929.1
description PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15833 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00734: 34764-35468 , PASA_asmbl_00735: 34770-35675
cDNA
(Sanger)
(ID:Location)		 028_D06.ab1: 34770-35176

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010142_040 0.0 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
2 Hb_000827_090 0.0677178143 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
3 Hb_032920_040 0.0945005428 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
4 Hb_001213_140 0.0982029489 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
5 Hb_000777_020 0.1100288605 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
6 Hb_027905_010 0.1217348904 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_000221_280 0.1267354937 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
8 Hb_158926_010 0.1339593137 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
9 Hb_005282_010 0.1355248559 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
10 Hb_001787_070 0.1363882444 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
11 Hb_019026_030 0.1370758278 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
12 Hb_000668_170 0.139134621 - - sulfate transporter, putative [Ricinus communis]
13 Hb_003864_020 0.1398062236 - - kinase, putative [Ricinus communis]
14 Hb_000731_020 0.141372477 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
15 Hb_007441_150 0.1450702235 - - Ankyrin repeat family protein [Theobroma cacao]
16 Hb_000988_020 0.1454732952 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
17 Hb_000506_130 0.1477578917 - - DGCR14-related family protein [Populus trichocarpa]
18 Hb_000373_250 0.1478383345 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
19 Hb_002053_030 0.1485138713 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_000805_150 0.1488890573 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_010142_040 Hb_010142_040 Hb_000827_090 Hb_000827_090 Hb_010142_040--Hb_000827_090 Hb_032920_040 Hb_032920_040 Hb_010142_040--Hb_032920_040 Hb_001213_140 Hb_001213_140 Hb_010142_040--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_010142_040--Hb_000777_020 Hb_027905_010 Hb_027905_010 Hb_010142_040--Hb_027905_010 Hb_000221_280 Hb_000221_280 Hb_010142_040--Hb_000221_280 Hb_000827_090--Hb_001213_140 Hb_000827_090--Hb_000777_020 Hb_000827_090--Hb_000221_280 Hb_000827_090--Hb_032920_040 Hb_000731_020 Hb_000731_020 Hb_000827_090--Hb_000731_020 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_082225_010 Hb_082225_010 Hb_032920_040--Hb_082225_010 Hb_000805_150 Hb_000805_150 Hb_032920_040--Hb_000805_150 Hb_002053_030 Hb_002053_030 Hb_032920_040--Hb_002053_030 Hb_001213_140--Hb_000777_020 Hb_001213_140--Hb_000221_280 Hb_001213_140--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_001213_140--Hb_003071_040 Hb_000777_020--Hb_027905_010 Hb_001195_650 Hb_001195_650 Hb_000777_020--Hb_001195_650 Hb_005389_090 Hb_005389_090 Hb_000777_020--Hb_005389_090 Hb_003209_040 Hb_003209_040 Hb_027905_010--Hb_003209_040 Hb_027905_010--Hb_001195_650 Hb_027905_010--Hb_000827_090 Hb_019026_030 Hb_019026_030 Hb_027905_010--Hb_019026_030 Hb_000221_280--Hb_000731_020 Hb_000529_050 Hb_000529_050 Hb_000221_280--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_000221_280--Hb_000313_190 Hb_029622_080 Hb_029622_080 Hb_000221_280--Hb_029622_080 Hb_000221_280--Hb_003071_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0868 602.304 184.264 368.576 6.2766 11.288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.391 12.9903 5.48964 16.3519 21.0231

CAGE analysis