Hb_082225_010

Information

Type -
Description -
Location Contig82225: 31-801
Sequence    

Annotation

kegg
ID tcc:TCM_015936
description DWNN domain isoform 1
nr
ID XP_007039788.1
description DWNN domain isoform 2 [Theobroma cacao]
swissprot
ID O94264
description Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.15c PE=3 SV=1
trembl
ID A0A061GB76
description DWNN domain isoform 2 OS=Theobroma cacao GN=TCM_015936 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dwnn domain isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082225_010 0.0 - - DWNN domain isoform 2 [Theobroma cacao]
2 Hb_031530_010 0.0518093966 - - DWNN domain isoform 2 [Theobroma cacao]
3 Hb_001404_010 0.1077246362 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
4 Hb_032920_040 0.113882669 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
5 Hb_000827_090 0.1450276185 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
6 Hb_010142_040 0.1490208584 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
7 Hb_158926_010 0.1498340351 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_001787_070 0.1507943292 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
9 Hb_101058_020 0.152798749 - - DWNN domain isoform 2 [Theobroma cacao]
10 Hb_000836_160 0.1540331406 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
11 Hb_001894_060 0.1555620166 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
12 Hb_000221_280 0.1627254659 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
13 Hb_000731_020 0.1638661153 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
14 Hb_000313_190 0.1689854639 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
15 Hb_019654_010 0.1780901158 - - multicopper oxidase, putative [Ricinus communis]
16 Hb_004079_040 0.1807425018 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
17 Hb_001268_060 0.1808051297 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005976_040 0.1813390771 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
19 Hb_000529_050 0.1820467282 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
20 Hb_006043_020 0.1828915477 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_082225_010 Hb_082225_010 Hb_031530_010 Hb_031530_010 Hb_082225_010--Hb_031530_010 Hb_001404_010 Hb_001404_010 Hb_082225_010--Hb_001404_010 Hb_032920_040 Hb_032920_040 Hb_082225_010--Hb_032920_040 Hb_000827_090 Hb_000827_090 Hb_082225_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_082225_010--Hb_010142_040 Hb_158926_010 Hb_158926_010 Hb_082225_010--Hb_158926_010 Hb_031530_010--Hb_001404_010 Hb_031530_010--Hb_032920_040 Hb_031530_010--Hb_000827_090 Hb_000313_190 Hb_000313_190 Hb_031530_010--Hb_000313_190 Hb_003023_060 Hb_003023_060 Hb_031530_010--Hb_003023_060 Hb_001404_010--Hb_000313_190 Hb_000221_280 Hb_000221_280 Hb_001404_010--Hb_000221_280 Hb_000529_050 Hb_000529_050 Hb_001404_010--Hb_000529_050 Hb_001477_080 Hb_001477_080 Hb_001404_010--Hb_001477_080 Hb_032920_040--Hb_010142_040 Hb_032920_040--Hb_000827_090 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_000805_150 Hb_000805_150 Hb_032920_040--Hb_000805_150 Hb_002053_030 Hb_002053_030 Hb_032920_040--Hb_002053_030 Hb_000827_090--Hb_010142_040 Hb_001213_140 Hb_001213_140 Hb_000827_090--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_000827_090--Hb_000777_020 Hb_000827_090--Hb_000221_280 Hb_000731_020 Hb_000731_020 Hb_000827_090--Hb_000731_020 Hb_010142_040--Hb_001213_140 Hb_010142_040--Hb_000777_020 Hb_027905_010 Hb_027905_010 Hb_010142_040--Hb_027905_010 Hb_010142_040--Hb_000221_280 Hb_101058_020 Hb_101058_020 Hb_158926_010--Hb_101058_020 Hb_001894_060 Hb_001894_060 Hb_158926_010--Hb_001894_060 Hb_000808_090 Hb_000808_090 Hb_158926_010--Hb_000808_090 Hb_022137_020 Hb_022137_020 Hb_158926_010--Hb_022137_020 Hb_004079_040 Hb_004079_040 Hb_158926_010--Hb_004079_040 Hb_000665_090 Hb_000665_090 Hb_158926_010--Hb_000665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.200575 18.6824 5.67685 8.02933 0.505248 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.77986 1.28208 0 0.158146 0.222945

CAGE analysis