Hb_031530_010

Information

Type -
Description -
Location Contig31530: 2210-6308
Sequence    

Annotation

kegg
ID tcc:TCM_015936
description DWNN domain isoform 1
nr
ID XP_007039788.1
description DWNN domain isoform 2 [Theobroma cacao]
swissprot
ID Q7Z6E9
description E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens GN=RBBP6 PE=1 SV=1
trembl
ID A0A061GB76
description DWNN domain isoform 2 OS=Theobroma cacao GN=TCM_015936 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33275: 4960-5501 , PASA_asmbl_33276: 5551-6063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031530_010 0.0 - - DWNN domain isoform 2 [Theobroma cacao]
2 Hb_082225_010 0.0518093966 - - DWNN domain isoform 2 [Theobroma cacao]
3 Hb_001404_010 0.0813745271 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
4 Hb_032920_040 0.1288739917 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
5 Hb_000827_090 0.1484366621 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
6 Hb_000313_190 0.1527216709 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
7 Hb_003023_060 0.1542397328 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
8 Hb_010142_040 0.1553069711 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
9 Hb_001787_070 0.1564273488 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
10 Hb_000731_020 0.1571600048 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
11 Hb_000221_280 0.158432921 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
12 Hb_019654_010 0.161072702 - - multicopper oxidase, putative [Ricinus communis]
13 Hb_000836_160 0.163228269 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
14 Hb_000529_050 0.1651507386 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
15 Hb_158926_010 0.1665598492 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_001894_060 0.1741289483 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
17 Hb_101058_020 0.1743200589 - - DWNN domain isoform 2 [Theobroma cacao]
18 Hb_000805_150 0.1757244967 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
19 Hb_011287_020 0.1759498924 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001477_080 0.1764573542 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]

Gene co-expression network

sample Hb_031530_010 Hb_031530_010 Hb_082225_010 Hb_082225_010 Hb_031530_010--Hb_082225_010 Hb_001404_010 Hb_001404_010 Hb_031530_010--Hb_001404_010 Hb_032920_040 Hb_032920_040 Hb_031530_010--Hb_032920_040 Hb_000827_090 Hb_000827_090 Hb_031530_010--Hb_000827_090 Hb_000313_190 Hb_000313_190 Hb_031530_010--Hb_000313_190 Hb_003023_060 Hb_003023_060 Hb_031530_010--Hb_003023_060 Hb_082225_010--Hb_001404_010 Hb_082225_010--Hb_032920_040 Hb_082225_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_082225_010--Hb_010142_040 Hb_158926_010 Hb_158926_010 Hb_082225_010--Hb_158926_010 Hb_001404_010--Hb_000313_190 Hb_000221_280 Hb_000221_280 Hb_001404_010--Hb_000221_280 Hb_000529_050 Hb_000529_050 Hb_001404_010--Hb_000529_050 Hb_001477_080 Hb_001477_080 Hb_001404_010--Hb_001477_080 Hb_032920_040--Hb_010142_040 Hb_032920_040--Hb_000827_090 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_000805_150 Hb_000805_150 Hb_032920_040--Hb_000805_150 Hb_002053_030 Hb_002053_030 Hb_032920_040--Hb_002053_030 Hb_000827_090--Hb_010142_040 Hb_001213_140 Hb_001213_140 Hb_000827_090--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_000827_090--Hb_000777_020 Hb_000827_090--Hb_000221_280 Hb_000731_020 Hb_000731_020 Hb_000827_090--Hb_000731_020 Hb_000313_190--Hb_000529_050 Hb_000313_190--Hb_001477_080 Hb_000313_190--Hb_000221_280 Hb_000313_190--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_000313_190--Hb_003071_040 Hb_004242_160 Hb_004242_160 Hb_000313_190--Hb_004242_160 Hb_003023_060--Hb_001404_010 Hb_000134_010 Hb_000134_010 Hb_003023_060--Hb_000134_010 Hb_002097_150 Hb_002097_150 Hb_003023_060--Hb_002097_150 Hb_025477_030 Hb_025477_030 Hb_003023_060--Hb_025477_030 Hb_047833_010 Hb_047833_010 Hb_003023_060--Hb_047833_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147666 8.35838 2.06363 3.15846 0.149524 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.234194 0.460631 0 0.0551185 0.0482931

CAGE analysis