Hb_001195_650

Information

Type -
Description -
Location Contig1195: 458189-459696
Sequence    

Annotation

kegg
ID rcu:RCOM_1593610
description hypothetical protein
nr
ID XP_012071777.1
description PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
swissprot
ID Q9FJV7
description Calcium uniporter protein 4, mitochondrial OS=Arabidopsis thaliana GN=At5g42610 PE=2 SV=1
trembl
ID A0A067L2Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04389 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05865: 458336-460111 , PASA_asmbl_05866: 458446-458919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_650 0.0 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
2 Hb_027905_010 0.1126742956 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_003209_040 0.1144070714 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
4 Hb_004586_230 0.1161746714 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000983_110 0.1201700246 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
6 Hb_000777_020 0.1206389445 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
7 Hb_004241_200 0.1220152212 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
8 Hb_008406_030 0.122346617 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
9 Hb_000604_050 0.1240792395 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
10 Hb_012395_260 0.1274331749 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
11 Hb_006573_060 0.1287940932 - - hypothetical protein [Bruguiera gymnorhiza]
12 Hb_003939_090 0.1346193111 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_008352_020 0.1347082918 - - hypothetical protein [Cecembia lonarensis]
14 Hb_005687_060 0.1360389173 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
15 Hb_001587_220 0.1366303284 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_001189_150 0.1376660871 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
17 Hb_000638_180 0.1405400546 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
18 Hb_003209_120 0.1440504905 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
19 Hb_000714_070 0.1452619788 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
20 Hb_003906_150 0.1470666061 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001195_650 Hb_001195_650 Hb_027905_010 Hb_027905_010 Hb_001195_650--Hb_027905_010 Hb_003209_040 Hb_003209_040 Hb_001195_650--Hb_003209_040 Hb_004586_230 Hb_004586_230 Hb_001195_650--Hb_004586_230 Hb_000983_110 Hb_000983_110 Hb_001195_650--Hb_000983_110 Hb_000777_020 Hb_000777_020 Hb_001195_650--Hb_000777_020 Hb_004241_200 Hb_004241_200 Hb_001195_650--Hb_004241_200 Hb_027905_010--Hb_000777_020 Hb_027905_010--Hb_003209_040 Hb_000827_090 Hb_000827_090 Hb_027905_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_027905_010--Hb_010142_040 Hb_019026_030 Hb_019026_030 Hb_027905_010--Hb_019026_030 Hb_003209_040--Hb_004241_200 Hb_003209_040--Hb_019026_030 Hb_003209_120 Hb_003209_120 Hb_003209_040--Hb_003209_120 Hb_008406_030 Hb_008406_030 Hb_003209_040--Hb_008406_030 Hb_012395_260 Hb_012395_260 Hb_004586_230--Hb_012395_260 Hb_000702_040 Hb_000702_040 Hb_004586_230--Hb_000702_040 Hb_000365_190 Hb_000365_190 Hb_004586_230--Hb_000365_190 Hb_001587_220 Hb_001587_220 Hb_004586_230--Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_004586_230--Hb_006573_060 Hb_000604_050 Hb_000604_050 Hb_000983_110--Hb_000604_050 Hb_003906_150 Hb_003906_150 Hb_000983_110--Hb_003906_150 Hb_010267_030 Hb_010267_030 Hb_000983_110--Hb_010267_030 Hb_000714_070 Hb_000714_070 Hb_000983_110--Hb_000714_070 Hb_000120_600 Hb_000120_600 Hb_000983_110--Hb_000120_600 Hb_001213_140 Hb_001213_140 Hb_000777_020--Hb_001213_140 Hb_000777_020--Hb_000827_090 Hb_000777_020--Hb_010142_040 Hb_005389_090 Hb_005389_090 Hb_000777_020--Hb_005389_090 Hb_004241_200--Hb_008406_030 Hb_000638_180 Hb_000638_180 Hb_004241_200--Hb_000638_180 Hb_003209_090 Hb_003209_090 Hb_004241_200--Hb_003209_090 Hb_004241_200--Hb_000983_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0462273 8.80931 2.5254 10.5519 0.0359423 0.0521953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.211718 0.233151 0.0618449 0.761043 0.963072

CAGE analysis