Hb_033053_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig33053: 52-2738
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34742: 2515-3484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033053_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_046109_010 0.0968265739 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_164926_050 0.1078774372 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
4 Hb_007574_050 0.1237002189 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
5 Hb_007904_290 0.1334998687 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
6 Hb_012272_010 0.1351734776 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_000340_560 0.1374826344 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001141_210 0.139479148 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
9 Hb_001019_020 0.1403343778 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001247_160 0.1445707045 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
11 Hb_002936_030 0.1459169183 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
12 Hb_005375_070 0.1486315418 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
13 Hb_000402_030 0.1508613922 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
14 Hb_002014_050 0.1520470496 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
15 Hb_138086_010 0.1522284773 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
16 Hb_003078_070 0.1532503135 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
17 Hb_010721_010 0.1533224782 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
18 Hb_000069_430 0.1542917903 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
19 Hb_000031_160 0.1554479026 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
20 Hb_070634_010 0.1565239005 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_033053_010 Hb_033053_010 Hb_046109_010 Hb_046109_010 Hb_033053_010--Hb_046109_010 Hb_164926_050 Hb_164926_050 Hb_033053_010--Hb_164926_050 Hb_007574_050 Hb_007574_050 Hb_033053_010--Hb_007574_050 Hb_007904_290 Hb_007904_290 Hb_033053_010--Hb_007904_290 Hb_012272_010 Hb_012272_010 Hb_033053_010--Hb_012272_010 Hb_000340_560 Hb_000340_560 Hb_033053_010--Hb_000340_560 Hb_046109_010--Hb_007574_050 Hb_000069_430 Hb_000069_430 Hb_046109_010--Hb_000069_430 Hb_046109_010--Hb_164926_050 Hb_001019_020 Hb_001019_020 Hb_046109_010--Hb_001019_020 Hb_002936_030 Hb_002936_030 Hb_046109_010--Hb_002936_030 Hb_164926_050--Hb_000069_430 Hb_002078_250 Hb_002078_250 Hb_164926_050--Hb_002078_250 Hb_164926_050--Hb_007574_050 Hb_005000_050 Hb_005000_050 Hb_164926_050--Hb_005000_050 Hb_002235_370 Hb_002235_370 Hb_164926_050--Hb_002235_370 Hb_098160_010 Hb_098160_010 Hb_007574_050--Hb_098160_010 Hb_001898_010 Hb_001898_010 Hb_007574_050--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_007574_050--Hb_005375_070 Hb_007574_050--Hb_002936_030 Hb_000402_030 Hb_000402_030 Hb_007574_050--Hb_000402_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060 Hb_002014_050 Hb_002014_050 Hb_007904_290--Hb_002014_050 Hb_001430_010 Hb_001430_010 Hb_007904_290--Hb_001430_010 Hb_007904_290--Hb_012272_010 Hb_000071_090 Hb_000071_090 Hb_007904_290--Hb_000071_090 Hb_001627_010 Hb_001627_010 Hb_007904_290--Hb_001627_010 Hb_004970_070 Hb_004970_070 Hb_007904_290--Hb_004970_070 Hb_005048_120 Hb_005048_120 Hb_012272_010--Hb_005048_120 Hb_010721_010 Hb_010721_010 Hb_012272_010--Hb_010721_010 Hb_012272_010--Hb_001019_020 Hb_001189_150 Hb_001189_150 Hb_012272_010--Hb_001189_150 Hb_012272_010--Hb_002936_030 Hb_000594_110 Hb_000594_110 Hb_000340_560--Hb_000594_110 Hb_001246_160 Hb_001246_160 Hb_000340_560--Hb_001246_160 Hb_017857_010 Hb_017857_010 Hb_000340_560--Hb_017857_010 Hb_000340_560--Hb_164926_050 Hb_002122_030 Hb_002122_030 Hb_000340_560--Hb_002122_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0715633 1.66146 1.51482 1.0367 0.112405 0.00717876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0186397 0.0293342 0 0.448641 0.249127

CAGE analysis