Hb_002936_030

Information

Type -
Description -
Location Contig2936: 23460-26553
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11950g
description POPTRDRAFT_779599; calmodulin-binding protein 60-D
nr
ID XP_012071464.1
description PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
swissprot
ID F4IPM3
description Calmodulin-binding protein 60 E OS=Arabidopsis thaliana GN=CBP60E PE=2 SV=1
trembl
ID A0A067KR81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002936_030 0.0 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
2 Hb_005048_120 0.0924598488 - - -
3 Hb_001247_160 0.1057014436 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
4 Hb_007574_050 0.1190066479 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
5 Hb_005282_010 0.1196847362 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
6 Hb_003078_070 0.1204632124 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
7 Hb_012272_010 0.1256985726 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_001405_060 0.1259648344 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
9 Hb_000172_410 0.1260216459 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_021254_020 0.1265919394 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_001019_020 0.1273773305 - - conserved hypothetical protein [Ricinus communis]
12 Hb_094437_050 0.1297625843 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
13 Hb_003633_150 0.1298129993 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
14 Hb_000985_140 0.1323883468 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
15 Hb_002234_200 0.1325929345 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
16 Hb_000373_250 0.1327775006 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
17 Hb_008948_110 0.1346774891 - - PREDICTED: peroxidase 25 [Jatropha curcas]
18 Hb_004109_240 0.1368312579 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_002498_250 0.137010095 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_046109_010 0.1385499869 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002936_030 Hb_002936_030 Hb_005048_120 Hb_005048_120 Hb_002936_030--Hb_005048_120 Hb_001247_160 Hb_001247_160 Hb_002936_030--Hb_001247_160 Hb_007574_050 Hb_007574_050 Hb_002936_030--Hb_007574_050 Hb_005282_010 Hb_005282_010 Hb_002936_030--Hb_005282_010 Hb_003078_070 Hb_003078_070 Hb_002936_030--Hb_003078_070 Hb_012272_010 Hb_012272_010 Hb_002936_030--Hb_012272_010 Hb_005048_120--Hb_012272_010 Hb_010721_010 Hb_010721_010 Hb_005048_120--Hb_010721_010 Hb_005048_120--Hb_001247_160 Hb_094437_050 Hb_094437_050 Hb_005048_120--Hb_094437_050 Hb_007904_290 Hb_007904_290 Hb_005048_120--Hb_007904_290 Hb_003633_150 Hb_003633_150 Hb_001247_160--Hb_003633_150 Hb_000985_140 Hb_000985_140 Hb_001247_160--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_001247_160--Hb_021254_020 Hb_001019_020 Hb_001019_020 Hb_001247_160--Hb_001019_020 Hb_001247_160--Hb_003078_070 Hb_098160_010 Hb_098160_010 Hb_007574_050--Hb_098160_010 Hb_001898_010 Hb_001898_010 Hb_007574_050--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_007574_050--Hb_005375_070 Hb_000402_030 Hb_000402_030 Hb_007574_050--Hb_000402_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060 Hb_005282_010--Hb_001405_060 Hb_002234_200 Hb_002234_200 Hb_005282_010--Hb_002234_200 Hb_000373_250 Hb_000373_250 Hb_005282_010--Hb_000373_250 Hb_005282_010--Hb_003633_150 Hb_002849_110 Hb_002849_110 Hb_005282_010--Hb_002849_110 Hb_005282_010--Hb_098160_010 Hb_003078_070--Hb_000985_140 Hb_003078_070--Hb_021254_020 Hb_000172_410 Hb_000172_410 Hb_003078_070--Hb_000172_410 Hb_004837_200 Hb_004837_200 Hb_003078_070--Hb_004837_200 Hb_000071_090 Hb_000071_090 Hb_003078_070--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_003078_070--Hb_000836_420 Hb_012272_010--Hb_010721_010 Hb_012272_010--Hb_007904_290 Hb_012272_010--Hb_001019_020 Hb_001189_150 Hb_001189_150 Hb_012272_010--Hb_001189_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.320606 9.02507 5.66839 4.19484 0.0882799 0.171368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206559 0.194977 0 0.768259 1.27671

CAGE analysis