Hb_005375_070

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5375: 68286-77169
Sequence    

Annotation

kegg
ID rcu:RCOM_1340450
description hypothetical protein
nr
ID XP_012083087.1
description PREDICTED: protein LHY [Jatropha curcas]
swissprot
ID Q6R0H1
description Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
trembl
ID A0A067JWZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14173 PE=4 SV=1
Gene Ontology
ID GO:0003682
description protein lhy-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47618: 73262-73639 , PASA_asmbl_47619: 71126-71479 , PASA_asmbl_47620: 69516-69998 , PASA_asmbl_47622: 69829-76274 , PASA_asmbl_47623: 76275-77075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_070 0.0 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
2 Hb_001898_010 0.0802754848 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
3 Hb_000402_030 0.0991744063 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
4 Hb_017857_010 0.1061720767 - - -
5 Hb_005000_050 0.1130019604 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
6 Hb_002343_020 0.1152201857 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
7 Hb_149484_010 0.1166282945 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
8 Hb_007574_050 0.117286193 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
9 Hb_004712_160 0.1182931458 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
10 Hb_009476_110 0.1212389458 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
11 Hb_005814_010 0.1280448022 - - ATP binding protein, putative [Ricinus communis]
12 Hb_023386_050 0.1300426352 - - conserved hypothetical protein [Ricinus communis]
13 Hb_048476_040 0.1300473648 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
14 Hb_000451_040 0.1313427444 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003905_040 0.1315294938 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
16 Hb_172676_010 0.1320451347 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
17 Hb_001294_050 0.1331219171 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
18 Hb_004032_090 0.1333256869 - - PREDICTED: protein AIG1 [Jatropha curcas]
19 Hb_002073_020 0.1338942349 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
20 Hb_098160_010 0.1339578865 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005375_070 Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_005375_070--Hb_001898_010 Hb_000402_030 Hb_000402_030 Hb_005375_070--Hb_000402_030 Hb_017857_010 Hb_017857_010 Hb_005375_070--Hb_017857_010 Hb_005000_050 Hb_005000_050 Hb_005375_070--Hb_005000_050 Hb_002343_020 Hb_002343_020 Hb_005375_070--Hb_002343_020 Hb_149484_010 Hb_149484_010 Hb_005375_070--Hb_149484_010 Hb_001898_010--Hb_000402_030 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_007574_050 Hb_007574_050 Hb_001898_010--Hb_007574_050 Hb_098160_010 Hb_098160_010 Hb_001898_010--Hb_098160_010 Hb_009476_110 Hb_009476_110 Hb_001898_010--Hb_009476_110 Hb_000402_030--Hb_002343_020 Hb_005814_010 Hb_005814_010 Hb_000402_030--Hb_005814_010 Hb_000402_030--Hb_149484_010 Hb_000402_030--Hb_007574_050 Hb_006615_160 Hb_006615_160 Hb_017857_010--Hb_006615_160 Hb_000776_050 Hb_000776_050 Hb_017857_010--Hb_000776_050 Hb_017857_010--Hb_098160_010 Hb_017857_010--Hb_007574_050 Hb_017857_010--Hb_001898_010 Hb_005000_050--Hb_149484_010 Hb_001951_240 Hb_001951_240 Hb_005000_050--Hb_001951_240 Hb_023386_050 Hb_023386_050 Hb_005000_050--Hb_023386_050 Hb_005000_050--Hb_007574_050 Hb_005000_050--Hb_004712_160 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_005649_010 Hb_005649_010 Hb_002343_020--Hb_005649_010 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_003905_040 Hb_003905_040 Hb_149484_010--Hb_003905_040 Hb_006052_060 Hb_006052_060 Hb_149484_010--Hb_006052_060 Hb_003430_070 Hb_003430_070 Hb_149484_010--Hb_003430_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7705 389.429 234.201 166.916 17.3907 15.2951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1145 6.94251 15.7649 99.2082 75.9582

CAGE analysis