Hb_006052_060

Information

Type -
Description -
Location Contig6052: 63219-66632
Sequence    

Annotation

kegg
ID rcu:RCOM_0489240
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012089810.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067JS79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00447 PE=4 SV=1
Gene Ontology
ID GO:0016491
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50740: 63057-63495 , PASA_asmbl_50742: 64809-65266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006052_060 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_001619_160 0.077125322 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
3 Hb_003430_070 0.0979649316 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
4 Hb_001318_140 0.104186822 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
5 Hb_172676_010 0.1062599625 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
6 Hb_149484_010 0.1119975325 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
7 Hb_001242_190 0.1190639581 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
8 Hb_003656_170 0.1236231178 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
9 Hb_002324_050 0.1248113471 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
10 Hb_065525_010 0.1254970839 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
11 Hb_002343_020 0.1262688959 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
12 Hb_023386_050 0.1271988123 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004032_090 0.1272699076 - - PREDICTED: protein AIG1 [Jatropha curcas]
14 Hb_001123_170 0.1280492311 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000369_070 0.1289045589 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_003905_040 0.1296172195 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
17 Hb_007382_100 0.1325155864 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
18 Hb_132840_030 0.1329319297 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
19 Hb_000009_150 0.1342527321 - - carbohydrate transporter, putative [Ricinus communis]
20 Hb_026698_020 0.1359073125 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006052_060 Hb_006052_060 Hb_001619_160 Hb_001619_160 Hb_006052_060--Hb_001619_160 Hb_003430_070 Hb_003430_070 Hb_006052_060--Hb_003430_070 Hb_001318_140 Hb_001318_140 Hb_006052_060--Hb_001318_140 Hb_172676_010 Hb_172676_010 Hb_006052_060--Hb_172676_010 Hb_149484_010 Hb_149484_010 Hb_006052_060--Hb_149484_010 Hb_001242_190 Hb_001242_190 Hb_006052_060--Hb_001242_190 Hb_001619_160--Hb_001242_190 Hb_001619_160--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_001619_160--Hb_065525_010 Hb_001049_160 Hb_001049_160 Hb_001619_160--Hb_001049_160 Hb_007382_100 Hb_007382_100 Hb_001619_160--Hb_007382_100 Hb_000009_150 Hb_000009_150 Hb_003430_070--Hb_000009_150 Hb_003430_070--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003430_070--Hb_001357_060 Hb_132840_020 Hb_132840_020 Hb_003430_070--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_003430_070--Hb_000329_790 Hb_001318_140--Hb_007382_100 Hb_000087_100 Hb_000087_100 Hb_001318_140--Hb_000087_100 Hb_001318_140--Hb_065525_010 Hb_001318_140--Hb_149484_010 Hb_005539_100 Hb_005539_100 Hb_172676_010--Hb_005539_100 Hb_002073_020 Hb_002073_020 Hb_172676_010--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_001951_240 Hb_001951_240 Hb_172676_010--Hb_001951_240 Hb_003905_040 Hb_003905_040 Hb_149484_010--Hb_003905_040 Hb_005000_050 Hb_005000_050 Hb_149484_010--Hb_005000_050 Hb_000402_030 Hb_000402_030 Hb_149484_010--Hb_000402_030 Hb_005375_070 Hb_005375_070 Hb_149484_010--Hb_005375_070 Hb_001242_190--Hb_065525_010 Hb_001242_190--Hb_001318_140 Hb_000207_290 Hb_000207_290 Hb_001242_190--Hb_000207_290 Hb_001242_190--Hb_001049_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.471948 12.8608 5.58223 6.6484 0.215417 0.468312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.303562 0.587264 0.763161 4.80907 5.0656

CAGE analysis