Hb_061908_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig61908: 6068-8038
Sequence    

Annotation

kegg
ID rcu:RCOM_0407120
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065715.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9SU68
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_0407120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061908_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_004605_020 0.0694175787 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
3 Hb_062229_010 0.1036752718 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_001391_100 0.116910662 - - AMP dependent ligase, putative [Ricinus communis]
5 Hb_172676_010 0.1178657361 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
6 Hb_027337_030 0.1220288645 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
7 Hb_006618_020 0.1260294471 - - Vacuolar-processing enzyme precursor [Ricinus communis]
8 Hb_005155_010 0.1297949073 - - amino acid transporter, putative [Ricinus communis]
9 Hb_000100_210 0.1310526457 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
10 Hb_000369_070 0.1373893271 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_000175_270 0.1392463348 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
12 Hb_000261_320 0.1405655869 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_029748_020 0.1439948841 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_006052_060 0.144157152 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_002874_170 0.1463669562 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
16 Hb_000417_410 0.1473054705 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
17 Hb_002217_070 0.1482096025 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
18 Hb_073973_020 0.1482806144 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
19 Hb_000321_120 0.1491974075 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
20 Hb_002006_060 0.1494493392 - - PREDICTED: oleosin 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_061908_020 Hb_061908_020 Hb_004605_020 Hb_004605_020 Hb_061908_020--Hb_004605_020 Hb_062229_010 Hb_062229_010 Hb_061908_020--Hb_062229_010 Hb_001391_100 Hb_001391_100 Hb_061908_020--Hb_001391_100 Hb_172676_010 Hb_172676_010 Hb_061908_020--Hb_172676_010 Hb_027337_030 Hb_027337_030 Hb_061908_020--Hb_027337_030 Hb_006618_020 Hb_006618_020 Hb_061908_020--Hb_006618_020 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_004605_020--Hb_062229_010 Hb_062229_010--Hb_001391_100 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_010261_030 Hb_010261_030 Hb_062229_010--Hb_010261_030 Hb_001391_100--Hb_000197_230 Hb_000261_320 Hb_000261_320 Hb_001391_100--Hb_000261_320 Hb_002003_040 Hb_002003_040 Hb_001391_100--Hb_002003_040 Hb_001391_100--Hb_004605_020 Hb_005539_100 Hb_005539_100 Hb_172676_010--Hb_005539_100 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_002073_020 Hb_002073_020 Hb_172676_010--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_001951_240 Hb_001951_240 Hb_172676_010--Hb_001951_240 Hb_083242_020 Hb_083242_020 Hb_027337_030--Hb_083242_020 Hb_004007_230 Hb_004007_230 Hb_027337_030--Hb_004007_230 Hb_004032_330 Hb_004032_330 Hb_027337_030--Hb_004032_330 Hb_002110_110 Hb_002110_110 Hb_027337_030--Hb_002110_110 Hb_033312_090 Hb_033312_090 Hb_006618_020--Hb_033312_090 Hb_000522_130 Hb_000522_130 Hb_006618_020--Hb_000522_130 Hb_002006_060 Hb_002006_060 Hb_006618_020--Hb_002006_060 Hb_000369_070 Hb_000369_070 Hb_006618_020--Hb_000369_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113987 2.91839 0.965413 1.13943 0.104445 0.303478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0801815 0.0315363 0.0586957 1.18729 1.82846

CAGE analysis