Hb_004032_330

Information

Type -
Description -
Location Contig4032: 324186-324617
Sequence    

Annotation

kegg
ID rcu:RCOM_1602310
description hypothetical protein
nr
ID XP_012073545.1
description PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
swissprot
ID Q9C9K2
description Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1
trembl
ID A0A067KKW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08018 PE=4 SV=1
Gene Ontology
ID GO:0043234
description calvin cycle protein cp12- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_330 0.0 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
2 Hb_005016_100 0.0699432364 - - -
3 Hb_000770_010 0.0768258575 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_021409_120 0.1377552944 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_004604_030 0.1405349703 - - unnamed protein product [Coffea canephora]
6 Hb_027337_030 0.1411305117 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
7 Hb_003077_140 0.1512682493 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
8 Hb_001153_090 0.1568484116 - - PREDICTED: protein FAM63A [Jatropha curcas]
9 Hb_007472_020 0.1616077836 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
10 Hb_006483_090 0.1631236963 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
11 Hb_002344_080 0.1635446805 - - PREDICTED: protein YLS2-like [Populus euphratica]
12 Hb_000614_190 0.1653498886 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
13 Hb_001357_360 0.1674372954 - - zinc finger protein, putative [Ricinus communis]
14 Hb_061908_020 0.1701924423 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_004605_020 0.1714564173 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
16 Hb_031862_200 0.1720573094 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
17 Hb_004864_020 0.1723611334 - - Polyprotein, putative [Solanum demissum]
18 Hb_000418_150 0.1742117089 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_003007_030 0.174308954 - - -
20 Hb_033153_040 0.1751401061 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004032_330 Hb_004032_330 Hb_005016_100 Hb_005016_100 Hb_004032_330--Hb_005016_100 Hb_000770_010 Hb_000770_010 Hb_004032_330--Hb_000770_010 Hb_021409_120 Hb_021409_120 Hb_004032_330--Hb_021409_120 Hb_004604_030 Hb_004604_030 Hb_004032_330--Hb_004604_030 Hb_027337_030 Hb_027337_030 Hb_004032_330--Hb_027337_030 Hb_003077_140 Hb_003077_140 Hb_004032_330--Hb_003077_140 Hb_005016_100--Hb_000770_010 Hb_005016_100--Hb_004604_030 Hb_002010_070 Hb_002010_070 Hb_005016_100--Hb_002010_070 Hb_000614_190 Hb_000614_190 Hb_005016_100--Hb_000614_190 Hb_001357_360 Hb_001357_360 Hb_005016_100--Hb_001357_360 Hb_000770_010--Hb_021409_120 Hb_006483_090 Hb_006483_090 Hb_000770_010--Hb_006483_090 Hb_004864_020 Hb_004864_020 Hb_000770_010--Hb_004864_020 Hb_000679_260 Hb_000679_260 Hb_000770_010--Hb_000679_260 Hb_021409_120--Hb_006483_090 Hb_000270_250 Hb_000270_250 Hb_021409_120--Hb_000270_250 Hb_000500_230 Hb_000500_230 Hb_021409_120--Hb_000500_230 Hb_000007_440 Hb_000007_440 Hb_021409_120--Hb_000007_440 Hb_000101_300 Hb_000101_300 Hb_004604_030--Hb_000101_300 Hb_007472_020 Hb_007472_020 Hb_004604_030--Hb_007472_020 Hb_004604_030--Hb_021409_120 Hb_004604_030--Hb_000770_010 Hb_083242_020 Hb_083242_020 Hb_027337_030--Hb_083242_020 Hb_004605_020 Hb_004605_020 Hb_027337_030--Hb_004605_020 Hb_061908_020 Hb_061908_020 Hb_027337_030--Hb_061908_020 Hb_004007_230 Hb_004007_230 Hb_027337_030--Hb_004007_230 Hb_002110_110 Hb_002110_110 Hb_027337_030--Hb_002110_110 Hb_000767_010 Hb_000767_010 Hb_003077_140--Hb_000767_010 Hb_001153_090 Hb_001153_090 Hb_003077_140--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_003077_140--Hb_033153_040 Hb_123560_050 Hb_123560_050 Hb_003077_140--Hb_123560_050 Hb_003077_140--Hb_001357_360 Hb_002818_070 Hb_002818_070 Hb_003077_140--Hb_002818_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.743222 0.366974 0.40125 0 0.132495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.401452 0.732572

CAGE analysis