Hb_007472_020

Information

Type -
Description -
Location Contig7472: 26470-30288
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_007224141.1
description hypothetical protein PRUPE_ppa016115mg [Prunus persica]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID M5Y103
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016115mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007472_020 0.0 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
2 Hb_004032_330 0.1616077836 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
3 Hb_000101_300 0.1616727569 desease resistance Gene Name: NB-ARC hypothetical protein B456_002G046500, partial [Gossypium raimondii]
4 Hb_000770_010 0.1617487836 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
5 Hb_004604_030 0.1624278787 - - unnamed protein product [Coffea canephora]
6 Hb_000703_180 0.1890210768 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
7 Hb_021409_120 0.1958111023 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_005016_100 0.1977842453 - - -
9 Hb_000139_400 0.202757578 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004864_020 0.2178347547 - - Polyprotein, putative [Solanum demissum]
11 Hb_146420_010 0.2240223025 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_001476_090 0.2266022983 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
13 Hb_000418_150 0.2404208539 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_027337_030 0.2421298202 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
15 Hb_000917_200 0.242798435 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
16 Hb_001141_060 0.2451425111 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
17 Hb_003007_030 0.2477498832 - - -
18 Hb_011287_060 0.2516503128 - - -
19 Hb_000992_020 0.2544264198 - - monoxygenase, putative [Ricinus communis]
20 Hb_029748_020 0.2571194614 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007472_020 Hb_007472_020 Hb_004032_330 Hb_004032_330 Hb_007472_020--Hb_004032_330 Hb_000101_300 Hb_000101_300 Hb_007472_020--Hb_000101_300 Hb_000770_010 Hb_000770_010 Hb_007472_020--Hb_000770_010 Hb_004604_030 Hb_004604_030 Hb_007472_020--Hb_004604_030 Hb_000703_180 Hb_000703_180 Hb_007472_020--Hb_000703_180 Hb_021409_120 Hb_021409_120 Hb_007472_020--Hb_021409_120 Hb_005016_100 Hb_005016_100 Hb_004032_330--Hb_005016_100 Hb_004032_330--Hb_000770_010 Hb_004032_330--Hb_021409_120 Hb_004032_330--Hb_004604_030 Hb_027337_030 Hb_027337_030 Hb_004032_330--Hb_027337_030 Hb_003077_140 Hb_003077_140 Hb_004032_330--Hb_003077_140 Hb_000101_300--Hb_004604_030 Hb_000101_300--Hb_004032_330 Hb_000101_300--Hb_000770_010 Hb_000101_300--Hb_021409_120 Hb_000101_300--Hb_005016_100 Hb_000770_010--Hb_005016_100 Hb_000770_010--Hb_021409_120 Hb_006483_090 Hb_006483_090 Hb_000770_010--Hb_006483_090 Hb_004864_020 Hb_004864_020 Hb_000770_010--Hb_004864_020 Hb_000679_260 Hb_000679_260 Hb_000770_010--Hb_000679_260 Hb_004604_030--Hb_005016_100 Hb_004604_030--Hb_021409_120 Hb_004604_030--Hb_000770_010 Hb_000409_040 Hb_000409_040 Hb_000703_180--Hb_000409_040 Hb_000261_320 Hb_000261_320 Hb_000703_180--Hb_000261_320 Hb_001476_090 Hb_001476_090 Hb_000703_180--Hb_001476_090 Hb_000703_180--Hb_004864_020 Hb_002918_020 Hb_002918_020 Hb_000703_180--Hb_002918_020 Hb_021409_120--Hb_006483_090 Hb_000270_250 Hb_000270_250 Hb_021409_120--Hb_000270_250 Hb_000500_230 Hb_000500_230 Hb_021409_120--Hb_000500_230 Hb_000007_440 Hb_000007_440 Hb_021409_120--Hb_000007_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0144382 0.0125948 0.00811299 0 0.0100731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00775219 0.020919

CAGE analysis