Hb_000409_040

Information

Type transcription factor
Description TF Family: AP2
Location Contig409: 132248-134116
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11470g
description POPTRDRAFT_778456; hypothetical protein
nr
ID XP_002323836.1
description hypothetical protein POPTR_0017s11470g [Populus trichocarpa]
swissprot
ID Q6X5Y6
description Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1
trembl
ID B9IJT7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11470g PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor at1g16060

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000409_040 0.0 transcription factor TF Family: AP2 hypothetical protein POPTR_0017s11470g [Populus trichocarpa]
2 Hb_000703_180 0.139835569 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
3 Hb_005523_050 0.1801391862 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
4 Hb_000737_010 0.1986172268 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
5 Hb_000574_370 0.204941285 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
6 Hb_004864_020 0.2074135428 - - Polyprotein, putative [Solanum demissum]
7 Hb_006681_030 0.2109462438 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
8 Hb_032717_010 0.2140491306 - - unnamed protein product [Vitis vinifera]
9 Hb_001689_070 0.2148274161 - - cytochrome P450, putative [Ricinus communis]
10 Hb_003106_110 0.2149330874 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
11 Hb_133151_010 0.2168109129 - - NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
12 Hb_001488_280 0.2202822067 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
13 Hb_002093_050 0.2209072381 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
14 Hb_012033_010 0.2215951756 - - PREDICTED: histone H1.2-like [Jatropha curcas]
15 Hb_000261_320 0.2225209939 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_001476_090 0.2228449513 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
17 Hb_004306_130 0.2234776584 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
18 Hb_002217_390 0.2247510295 - - PREDICTED: galactokinase [Jatropha curcas]
19 Hb_000139_510 0.226329009 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
20 Hb_001277_400 0.2280961978 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000409_040 Hb_000409_040 Hb_000703_180 Hb_000703_180 Hb_000409_040--Hb_000703_180 Hb_005523_050 Hb_005523_050 Hb_000409_040--Hb_005523_050 Hb_000737_010 Hb_000737_010 Hb_000409_040--Hb_000737_010 Hb_000574_370 Hb_000574_370 Hb_000409_040--Hb_000574_370 Hb_004864_020 Hb_004864_020 Hb_000409_040--Hb_004864_020 Hb_006681_030 Hb_006681_030 Hb_000409_040--Hb_006681_030 Hb_000261_320 Hb_000261_320 Hb_000703_180--Hb_000261_320 Hb_001476_090 Hb_001476_090 Hb_000703_180--Hb_001476_090 Hb_000703_180--Hb_004864_020 Hb_002918_020 Hb_002918_020 Hb_000703_180--Hb_002918_020 Hb_007472_020 Hb_007472_020 Hb_000703_180--Hb_007472_020 Hb_032717_010 Hb_032717_010 Hb_005523_050--Hb_032717_010 Hb_003842_010 Hb_003842_010 Hb_005523_050--Hb_003842_010 Hb_002811_020 Hb_002811_020 Hb_005523_050--Hb_002811_020 Hb_005523_050--Hb_006681_030 Hb_001345_010 Hb_001345_010 Hb_005523_050--Hb_001345_010 Hb_003224_010 Hb_003224_010 Hb_005523_050--Hb_003224_010 Hb_000438_010 Hb_000438_010 Hb_000737_010--Hb_000438_010 Hb_007575_030 Hb_007575_030 Hb_000737_010--Hb_007575_030 Hb_000165_070 Hb_000165_070 Hb_000737_010--Hb_000165_070 Hb_000791_050 Hb_000791_050 Hb_000737_010--Hb_000791_050 Hb_004096_220 Hb_004096_220 Hb_000737_010--Hb_004096_220 Hb_000936_090 Hb_000936_090 Hb_000737_010--Hb_000936_090 Hb_000139_510 Hb_000139_510 Hb_000574_370--Hb_000139_510 Hb_002603_010 Hb_002603_010 Hb_000574_370--Hb_002603_010 Hb_001268_300 Hb_001268_300 Hb_000574_370--Hb_001268_300 Hb_001488_280 Hb_001488_280 Hb_000574_370--Hb_001488_280 Hb_009193_060 Hb_009193_060 Hb_000574_370--Hb_009193_060 Hb_002833_020 Hb_002833_020 Hb_000574_370--Hb_002833_020 Hb_000714_120 Hb_000714_120 Hb_004864_020--Hb_000714_120 Hb_000418_150 Hb_000418_150 Hb_004864_020--Hb_000418_150 Hb_002099_060 Hb_002099_060 Hb_004864_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_004864_020--Hb_029748_020 Hb_004864_020--Hb_000139_510 Hb_000438_020 Hb_000438_020 Hb_004864_020--Hb_000438_020 Hb_003881_020 Hb_003881_020 Hb_006681_030--Hb_003881_020 Hb_000760_080 Hb_000760_080 Hb_006681_030--Hb_000760_080 Hb_006681_030--Hb_003224_010 Hb_134174_010 Hb_134174_010 Hb_006681_030--Hb_134174_010 Hb_007676_040 Hb_007676_040 Hb_006681_030--Hb_007676_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0745816 0.161265 0.315829 0.132266 0 0.0853348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.349358 0.276807

CAGE analysis