Hb_000418_150

Information

Type -
Description -
Location Contig418: 172571-201699
Sequence    

Annotation

kegg
ID tcc:TCM_006080
description Multidrug resistance-associated protein 2 isoform 1
nr
ID AIU41637.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q42093
description ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2
trembl
ID A0A097P9R5
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCC2 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41335: 195453-196732 , PASA_asmbl_41337: 200790-201512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_150 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000438_020 0.0929950309 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
3 Hb_000757_020 0.1065724017 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
4 Hb_004864_020 0.1085691089 - - Polyprotein, putative [Solanum demissum]
5 Hb_003177_090 0.1105135444 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
6 Hb_001496_120 0.1162758704 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
7 Hb_002099_060 0.1167457237 - - Protein AFR, putative [Ricinus communis]
8 Hb_029748_020 0.1244197431 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_002344_080 0.1255567253 - - PREDICTED: protein YLS2-like [Populus euphratica]
10 Hb_003007_030 0.1266611575 - - -
11 Hb_083242_020 0.1294427565 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
12 Hb_000251_050 0.1363529036 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
13 Hb_049293_010 0.1369838798 - - kinase, putative [Ricinus communis]
14 Hb_002110_090 0.1398453066 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
15 Hb_001689_030 0.1418590583 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
16 Hb_000714_120 0.1422731574 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
17 Hb_155150_010 0.1437980423 - - kinase, putative [Ricinus communis]
18 Hb_027337_030 0.1452531662 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
19 Hb_002888_040 0.145318492 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
20 Hb_001476_090 0.1465328747 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000418_150 Hb_000418_150 Hb_000438_020 Hb_000438_020 Hb_000418_150--Hb_000438_020 Hb_000757_020 Hb_000757_020 Hb_000418_150--Hb_000757_020 Hb_004864_020 Hb_004864_020 Hb_000418_150--Hb_004864_020 Hb_003177_090 Hb_003177_090 Hb_000418_150--Hb_003177_090 Hb_001496_120 Hb_001496_120 Hb_000418_150--Hb_001496_120 Hb_002099_060 Hb_002099_060 Hb_000418_150--Hb_002099_060 Hb_000438_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_000438_020--Hb_029748_020 Hb_000438_020--Hb_003177_090 Hb_001307_200 Hb_001307_200 Hb_000438_020--Hb_001307_200 Hb_001689_030 Hb_001689_030 Hb_000438_020--Hb_001689_030 Hb_049293_010 Hb_049293_010 Hb_000757_020--Hb_049293_010 Hb_000757_020--Hb_003177_090 Hb_155150_010 Hb_155150_010 Hb_000757_020--Hb_155150_010 Hb_000714_120 Hb_000714_120 Hb_000757_020--Hb_000714_120 Hb_000366_030 Hb_000366_030 Hb_000757_020--Hb_000366_030 Hb_004864_020--Hb_000714_120 Hb_004864_020--Hb_002099_060 Hb_004864_020--Hb_029748_020 Hb_000139_510 Hb_000139_510 Hb_004864_020--Hb_000139_510 Hb_004864_020--Hb_000438_020 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200 Hb_000221_180 Hb_000221_180 Hb_001496_120--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_001496_120--Hb_073973_020 Hb_001496_120--Hb_001307_200 Hb_001496_120--Hb_000438_020 Hb_002888_060 Hb_002888_060 Hb_001496_120--Hb_002888_060 Hb_002099_060--Hb_029748_020 Hb_005724_040 Hb_005724_040 Hb_002099_060--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_002099_060--Hb_000181_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.591209 6.8741 3.65136 5.10431 0.934469 1.34479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155126 0.0366255 0 5.50843 9.42683

CAGE analysis