Hb_000703_180

Information

Type -
Description -
Location Contig703: 178665-179164
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID XP_009605667.1
description PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1BPI1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019390 PE=4 SV=1
Gene Ontology
ID GO:0003824
description reverse transcriptase family member

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54942: 168755-194788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_180 0.0 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
2 Hb_000409_040 0.139835569 transcription factor TF Family: AP2 hypothetical protein POPTR_0017s11470g [Populus trichocarpa]
3 Hb_000261_320 0.1767229325 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
4 Hb_001476_090 0.1797804636 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
5 Hb_004864_020 0.1841431432 - - Polyprotein, putative [Solanum demissum]
6 Hb_002918_020 0.1884965674 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
7 Hb_007472_020 0.1890210768 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
8 Hb_000770_010 0.1908191573 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
9 Hb_004032_330 0.2005370529 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
10 Hb_032717_010 0.2071610987 - - unnamed protein product [Vitis vinifera]
11 Hb_001496_120 0.2120982315 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
12 Hb_005523_050 0.2127105045 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
13 Hb_000418_150 0.212872953 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_148800_010 0.2133874313 - - -
15 Hb_003007_030 0.217072178 - - -
16 Hb_001391_100 0.2195994304 - - AMP dependent ligase, putative [Ricinus communis]
17 Hb_000936_090 0.2227797538 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Jatropha curcas]
18 Hb_000101_300 0.2243458555 desease resistance Gene Name: NB-ARC hypothetical protein B456_002G046500, partial [Gossypium raimondii]
19 Hb_000574_370 0.2244668335 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
20 Hb_027337_030 0.2245953785 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000703_180 Hb_000703_180 Hb_000409_040 Hb_000409_040 Hb_000703_180--Hb_000409_040 Hb_000261_320 Hb_000261_320 Hb_000703_180--Hb_000261_320 Hb_001476_090 Hb_001476_090 Hb_000703_180--Hb_001476_090 Hb_004864_020 Hb_004864_020 Hb_000703_180--Hb_004864_020 Hb_002918_020 Hb_002918_020 Hb_000703_180--Hb_002918_020 Hb_007472_020 Hb_007472_020 Hb_000703_180--Hb_007472_020 Hb_005523_050 Hb_005523_050 Hb_000409_040--Hb_005523_050 Hb_000737_010 Hb_000737_010 Hb_000409_040--Hb_000737_010 Hb_000574_370 Hb_000574_370 Hb_000409_040--Hb_000574_370 Hb_000409_040--Hb_004864_020 Hb_006681_030 Hb_006681_030 Hb_000409_040--Hb_006681_030 Hb_002003_040 Hb_002003_040 Hb_000261_320--Hb_002003_040 Hb_002833_020 Hb_002833_020 Hb_000261_320--Hb_002833_020 Hb_005880_010 Hb_005880_010 Hb_000261_320--Hb_005880_010 Hb_001391_100 Hb_001391_100 Hb_000261_320--Hb_001391_100 Hb_073973_020 Hb_073973_020 Hb_000261_320--Hb_073973_020 Hb_001268_300 Hb_001268_300 Hb_000261_320--Hb_001268_300 Hb_003007_030 Hb_003007_030 Hb_001476_090--Hb_003007_030 Hb_001496_120 Hb_001496_120 Hb_001476_090--Hb_001496_120 Hb_000365_220 Hb_000365_220 Hb_001476_090--Hb_000365_220 Hb_000418_150 Hb_000418_150 Hb_001476_090--Hb_000418_150 Hb_005542_010 Hb_005542_010 Hb_001476_090--Hb_005542_010 Hb_002888_060 Hb_002888_060 Hb_001476_090--Hb_002888_060 Hb_000714_120 Hb_000714_120 Hb_004864_020--Hb_000714_120 Hb_004864_020--Hb_000418_150 Hb_002099_060 Hb_002099_060 Hb_004864_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_004864_020--Hb_029748_020 Hb_000139_510 Hb_000139_510 Hb_004864_020--Hb_000139_510 Hb_000438_020 Hb_000438_020 Hb_004864_020--Hb_000438_020 Hb_002918_020--Hb_000261_320 Hb_001091_020 Hb_001091_020 Hb_002918_020--Hb_001091_020 Hb_002918_020--Hb_005880_010 Hb_002918_020--Hb_001496_120 Hb_159411_010 Hb_159411_010 Hb_002918_020--Hb_159411_010 Hb_136880_010 Hb_136880_010 Hb_002918_020--Hb_136880_010 Hb_004032_330 Hb_004032_330 Hb_007472_020--Hb_004032_330 Hb_000101_300 Hb_000101_300 Hb_007472_020--Hb_000101_300 Hb_000770_010 Hb_000770_010 Hb_007472_020--Hb_000770_010 Hb_004604_030 Hb_004604_030 Hb_007472_020--Hb_004604_030 Hb_021409_120 Hb_021409_120 Hb_007472_020--Hb_021409_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0947166 0.639379 0.533803 0.234827 0 0.310307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.688203 0.732572

CAGE analysis