Hb_001091_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1091: 20151-25154
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cc-nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001091_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_117168_010 0.1415304124 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_000313_370 0.1444742194 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_005880_010 0.1446615551 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
5 Hb_000141_010 0.1566192483 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
6 Hb_002218_070 0.1597773795 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
7 Hb_002660_040 0.1649572741 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
8 Hb_082683_010 0.1695226707 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
9 Hb_002918_020 0.1703019592 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
10 Hb_000808_220 0.1710296236 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
11 Hb_002640_040 0.1717404202 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002739_060 0.1726902778 - - -
13 Hb_001252_040 0.1753633088 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
14 Hb_008175_030 0.1755346939 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
15 Hb_002420_010 0.1761525744 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_002030_170 0.1795504914 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
17 Hb_000816_020 0.1796571664 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
18 Hb_001410_010 0.1804798978 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
19 Hb_006241_010 0.1811282575 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
20 Hb_071160_010 0.1813418915 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_001091_020 Hb_001091_020 Hb_117168_010 Hb_117168_010 Hb_001091_020--Hb_117168_010 Hb_000313_370 Hb_000313_370 Hb_001091_020--Hb_000313_370 Hb_005880_010 Hb_005880_010 Hb_001091_020--Hb_005880_010 Hb_000141_010 Hb_000141_010 Hb_001091_020--Hb_000141_010 Hb_002218_070 Hb_002218_070 Hb_001091_020--Hb_002218_070 Hb_002660_040 Hb_002660_040 Hb_001091_020--Hb_002660_040 Hb_002551_090 Hb_002551_090 Hb_117168_010--Hb_002551_090 Hb_001373_010 Hb_001373_010 Hb_117168_010--Hb_001373_010 Hb_003576_050 Hb_003576_050 Hb_117168_010--Hb_003576_050 Hb_000086_370 Hb_000086_370 Hb_117168_010--Hb_000086_370 Hb_006241_010 Hb_006241_010 Hb_117168_010--Hb_006241_010 Hb_000977_010 Hb_000977_010 Hb_000313_370--Hb_000977_010 Hb_003517_020 Hb_003517_020 Hb_000313_370--Hb_003517_020 Hb_000313_370--Hb_003576_050 Hb_002030_170 Hb_002030_170 Hb_000313_370--Hb_002030_170 Hb_001946_150 Hb_001946_150 Hb_000313_370--Hb_001946_150 Hb_000362_110 Hb_000362_110 Hb_000313_370--Hb_000362_110 Hb_008175_030 Hb_008175_030 Hb_005880_010--Hb_008175_030 Hb_002833_020 Hb_002833_020 Hb_005880_010--Hb_002833_020 Hb_005880_010--Hb_002660_040 Hb_000778_020 Hb_000778_020 Hb_005880_010--Hb_000778_020 Hb_000261_320 Hb_000261_320 Hb_005880_010--Hb_000261_320 Hb_001369_160 Hb_001369_160 Hb_005880_010--Hb_001369_160 Hb_000527_070 Hb_000527_070 Hb_000141_010--Hb_000527_070 Hb_000141_010--Hb_002218_070 Hb_001410_010 Hb_001410_010 Hb_000141_010--Hb_001410_010 Hb_082683_010 Hb_082683_010 Hb_000141_010--Hb_082683_010 Hb_002291_020 Hb_002291_020 Hb_000141_010--Hb_002291_020 Hb_002218_070--Hb_001410_010 Hb_117840_010 Hb_117840_010 Hb_002218_070--Hb_117840_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_002218_070--Hb_008175_030 Hb_000527_140 Hb_000527_140 Hb_002660_040--Hb_000527_140 Hb_064985_010 Hb_064985_010 Hb_002660_040--Hb_064985_010 Hb_002660_040--Hb_002833_020 Hb_001008_110 Hb_001008_110 Hb_002660_040--Hb_001008_110 Hb_002660_040--Hb_006241_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.275714 2.93563 0.678484 1.03439 0.460195 0.195587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0244255 0.187745 3.81097 1.64102

CAGE analysis