Hb_000527_070

Information

Type transcription factor
Description TF Family: SNF2
Location Contig527: 71570-89647
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04620g
description POPTRDRAFT_234045; hypothetical protein
nr
ID XP_012091545.1
description PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
swissprot
ID Q9FNI6
description Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
trembl
ID A0A067JAX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21388 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna repair helicase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47034: 71679-72287 , PASA_asmbl_47035: 71457-72511 , PASA_asmbl_47036: 73188-73448 , PASA_asmbl_47037: 73631-89760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000527_070 0.0 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
2 Hb_000141_010 0.0931865632 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
3 Hb_000527_140 0.1209574257 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
4 Hb_114684_010 0.1248827547 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
5 Hb_000847_020 0.1428980445 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
6 Hb_000345_340 0.1434432657 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
7 Hb_073973_020 0.1495678265 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
8 Hb_082683_010 0.1527660401 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
9 Hb_001307_200 0.154515968 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
10 Hb_002660_040 0.1569043972 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
11 Hb_011853_010 0.159156656 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
12 Hb_001268_300 0.16182999 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000205_250 0.1627922761 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
14 Hb_000227_330 0.163931763 - - Acyl-CoA synthetase [Ricinus communis]
15 Hb_000417_410 0.1642911694 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
16 Hb_002291_020 0.1651567577 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
17 Hb_002030_170 0.1654596609 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
18 Hb_042202_020 0.1666659106 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
19 Hb_001410_010 0.1681891978 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
20 Hb_007919_040 0.1700595306 - - PREDICTED: protein LYK5 [Jatropha curcas]

Gene co-expression network

sample Hb_000527_070 Hb_000527_070 Hb_000141_010 Hb_000141_010 Hb_000527_070--Hb_000141_010 Hb_000527_140 Hb_000527_140 Hb_000527_070--Hb_000527_140 Hb_114684_010 Hb_114684_010 Hb_000527_070--Hb_114684_010 Hb_000847_020 Hb_000847_020 Hb_000527_070--Hb_000847_020 Hb_000345_340 Hb_000345_340 Hb_000527_070--Hb_000345_340 Hb_073973_020 Hb_073973_020 Hb_000527_070--Hb_073973_020 Hb_002218_070 Hb_002218_070 Hb_000141_010--Hb_002218_070 Hb_001410_010 Hb_001410_010 Hb_000141_010--Hb_001410_010 Hb_082683_010 Hb_082683_010 Hb_000141_010--Hb_082683_010 Hb_002291_020 Hb_002291_020 Hb_000141_010--Hb_002291_020 Hb_001091_020 Hb_001091_020 Hb_000141_010--Hb_001091_020 Hb_000527_140--Hb_114684_010 Hb_064985_010 Hb_064985_010 Hb_000527_140--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_042202_020 Hb_042202_020 Hb_000527_140--Hb_042202_020 Hb_001008_110 Hb_001008_110 Hb_000527_140--Hb_001008_110 Hb_000527_140--Hb_000847_020 Hb_029622_020 Hb_029622_020 Hb_114684_010--Hb_029622_020 Hb_004032_090 Hb_004032_090 Hb_114684_010--Hb_004032_090 Hb_004007_120 Hb_004007_120 Hb_114684_010--Hb_004007_120 Hb_114684_010--Hb_042202_020 Hb_000024_130 Hb_000024_130 Hb_000847_020--Hb_000024_130 Hb_000847_020--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_000847_020--Hb_003142_060 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010 Hb_002471_140 Hb_002471_140 Hb_000345_340--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000345_340--Hb_008667_060 Hb_000271_120 Hb_000271_120 Hb_000345_340--Hb_000271_120 Hb_001080_140 Hb_001080_140 Hb_000345_340--Hb_001080_140 Hb_000866_090 Hb_000866_090 Hb_000345_340--Hb_000866_090 Hb_000059_130 Hb_000059_130 Hb_000345_340--Hb_000059_130 Hb_001307_200 Hb_001307_200 Hb_073973_020--Hb_001307_200 Hb_000221_180 Hb_000221_180 Hb_073973_020--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_001268_300 Hb_001268_300 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238672 11.2826 4.99215 3.77787 0.682678 1.10943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.736465 1.01428 1.90966 12.3054 6.62667

CAGE analysis