Hb_000847_020

Information

Type -
Description -
Location Contig847: 33948-35928
Sequence    

Annotation

kegg
ID rcu:RCOM_0318140
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012085038.1
description PREDICTED: ras-related protein RABA5b [Jatropha curcas]
swissprot
ID P19892
description Ras-related protein RABA5e OS=Arabidopsis thaliana GN=RABA5E PE=2 SV=1
trembl
ID A0A067L9Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15126 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba5b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60244: 34041-35849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_020 0.0 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
2 Hb_000527_140 0.1155096628 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_000024_130 0.1247254797 - - conserved hypothetical protein [Ricinus communis]
4 Hb_064985_010 0.1329201544 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
5 Hb_003142_060 0.1392780883 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000527_070 0.1428980445 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
7 Hb_004656_010 0.1436223348 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
8 Hb_000254_010 0.143688323 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
9 Hb_042202_020 0.1448786824 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
10 Hb_000760_080 0.1453535757 - - mutt domain protein, putative [Ricinus communis]
11 Hb_000005_340 0.1464851806 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
12 Hb_001008_110 0.1504073651 - - -
13 Hb_000453_130 0.15236244 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
14 Hb_001268_300 0.1531853491 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000417_280 0.1569531531 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001018_080 0.1574122634 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002660_040 0.1579108513 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
18 Hb_001123_190 0.158513229 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
19 Hb_011537_020 0.1588650913 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
20 Hb_000261_420 0.1599834602 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]

Gene co-expression network

sample Hb_000847_020 Hb_000847_020 Hb_000527_140 Hb_000527_140 Hb_000847_020--Hb_000527_140 Hb_000024_130 Hb_000024_130 Hb_000847_020--Hb_000024_130 Hb_064985_010 Hb_064985_010 Hb_000847_020--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_000847_020--Hb_003142_060 Hb_000527_070 Hb_000527_070 Hb_000847_020--Hb_000527_070 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010 Hb_114684_010 Hb_114684_010 Hb_000527_140--Hb_114684_010 Hb_000527_140--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_042202_020 Hb_042202_020 Hb_000527_140--Hb_042202_020 Hb_001008_110 Hb_001008_110 Hb_000527_140--Hb_001008_110 Hb_000731_210 Hb_000731_210 Hb_000024_130--Hb_000731_210 Hb_000760_080 Hb_000760_080 Hb_000024_130--Hb_000760_080 Hb_007575_030 Hb_007575_030 Hb_000024_130--Hb_007575_030 Hb_003106_230 Hb_003106_230 Hb_000024_130--Hb_003106_230 Hb_000024_130--Hb_042202_020 Hb_000024_130--Hb_003142_060 Hb_064985_010--Hb_001008_110 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010 Hb_000003_020 Hb_000003_020 Hb_003142_060--Hb_000003_020 Hb_000834_040 Hb_000834_040 Hb_003142_060--Hb_000834_040 Hb_003142_060--Hb_003106_230 Hb_003142_060--Hb_001008_110 Hb_003142_060--Hb_042202_020 Hb_000141_010 Hb_000141_010 Hb_000527_070--Hb_000141_010 Hb_000527_070--Hb_000527_140 Hb_000527_070--Hb_114684_010 Hb_000345_340 Hb_000345_340 Hb_000527_070--Hb_000345_340 Hb_073973_020 Hb_073973_020 Hb_000527_070--Hb_073973_020 Hb_000120_310 Hb_000120_310 Hb_004656_010--Hb_000120_310 Hb_004656_010--Hb_003106_230 Hb_004656_010--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_004656_010--Hb_000417_280 Hb_004656_010--Hb_003142_060 Hb_004656_010--Hb_064985_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.930266 23.9506 21.8182 15.8714 0.285692 0.998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0984 2.22137 4.6865 35.6888 15.7919

CAGE analysis