Hb_004656_010

Information

Type -
Description -
Location Contig4656: 9161-13394
Sequence    

Annotation

kegg
ID tcc:TCM_024538
description Calcium-binding EF-hand family protein isoform 1
nr
ID XP_012086224.1
description PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
swissprot
ID Q8W4L0
description Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1
trembl
ID A0A067JQC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21125 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml49

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44038: 9317-13376 , PASA_asmbl_44040: 12572-12839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004656_010 0.0 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
2 Hb_000120_310 0.1272772572 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
3 Hb_003106_230 0.1277133015 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
4 Hb_001008_110 0.129114445 - - -
5 Hb_000417_280 0.1301664362 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003142_060 0.1331324553 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
7 Hb_064985_010 0.1410052953 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
8 Hb_000847_020 0.1436223348 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
9 Hb_000024_130 0.1445854298 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033234_010 0.1458100054 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
11 Hb_000424_100 0.1477069835 desease resistance Gene Name: G-alpha GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]
12 Hb_005649_010 0.1516126503 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
13 Hb_000527_140 0.1574881359 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
14 Hb_000085_380 0.1575241254 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007575_030 0.1577891748 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
16 Hb_010174_190 0.158311465 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
17 Hb_000739_160 0.1585130743 - - DNA binding protein, putative [Ricinus communis]
18 Hb_002833_020 0.1589096395 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_002660_040 0.1603330318 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
20 Hb_068576_010 0.1603502056 - - hypothetical protein JCGZ_21627 [Jatropha curcas]

Gene co-expression network

sample Hb_004656_010 Hb_004656_010 Hb_000120_310 Hb_000120_310 Hb_004656_010--Hb_000120_310 Hb_003106_230 Hb_003106_230 Hb_004656_010--Hb_003106_230 Hb_001008_110 Hb_001008_110 Hb_004656_010--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_004656_010--Hb_000417_280 Hb_003142_060 Hb_003142_060 Hb_004656_010--Hb_003142_060 Hb_064985_010 Hb_064985_010 Hb_004656_010--Hb_064985_010 Hb_001856_170 Hb_001856_170 Hb_000120_310--Hb_001856_170 Hb_001369_160 Hb_001369_160 Hb_000120_310--Hb_001369_160 Hb_001488_280 Hb_001488_280 Hb_000120_310--Hb_001488_280 Hb_001596_020 Hb_001596_020 Hb_000120_310--Hb_001596_020 Hb_002833_020 Hb_002833_020 Hb_000120_310--Hb_002833_020 Hb_004586_240 Hb_004586_240 Hb_000120_310--Hb_004586_240 Hb_003106_230--Hb_003142_060 Hb_000731_210 Hb_000731_210 Hb_003106_230--Hb_000731_210 Hb_000318_170 Hb_000318_170 Hb_003106_230--Hb_000318_170 Hb_003106_230--Hb_001008_110 Hb_000024_130 Hb_000024_130 Hb_003106_230--Hb_000024_130 Hb_000085_380 Hb_000085_380 Hb_003106_230--Hb_000085_380 Hb_001008_110--Hb_000417_280 Hb_001008_110--Hb_002833_020 Hb_001008_110--Hb_064985_010 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_042202_020 Hb_042202_020 Hb_001008_110--Hb_042202_020 Hb_000417_280--Hb_002833_020 Hb_000417_280--Hb_032717_010 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_001268_300 Hb_001268_300 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_000003_020 Hb_000003_020 Hb_003142_060--Hb_000003_020 Hb_000834_040 Hb_000834_040 Hb_003142_060--Hb_000834_040 Hb_003142_060--Hb_042202_020 Hb_003142_060--Hb_000024_130 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_000527_140 Hb_000527_140 Hb_064985_010--Hb_000527_140 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21747 59.9771 62.4781 53.7225 4.3218 8.5558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62104 3.98882 4.98218 84.4841 22.439

CAGE analysis