Hb_117168_010

Information

Type -
Description -
Location Contig117168: 98-769
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012078559.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067KNB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07831 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05327: 142-286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117168_010 0.0 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_002551_090 0.1284340078 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
3 Hb_001373_010 0.1355790189 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_003576_050 0.1360517835 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
5 Hb_001091_020 0.1415304124 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_000086_370 0.1419898233 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
7 Hb_006241_010 0.1450643111 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_012807_060 0.1453642799 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_022501_020 0.145424152 - - AMP dependent CoA ligase, putative [Ricinus communis]
10 Hb_000638_090 0.1478060451 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_004195_170 0.1491255992 - - ATP binding protein, putative [Ricinus communis]
12 Hb_002928_120 0.1538157147 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
13 Hb_182021_010 0.1561731004 - - sucrose transporter 4 [Hevea brasiliensis]
14 Hb_004316_030 0.1563386362 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
15 Hb_001408_050 0.1619505672 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000740_130 0.162825081 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
17 Hb_000236_110 0.1639772359 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
18 Hb_009823_010 0.1666464304 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
19 Hb_151706_010 0.1676476568 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
20 Hb_000313_370 0.1679955505 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_117168_010 Hb_117168_010 Hb_002551_090 Hb_002551_090 Hb_117168_010--Hb_002551_090 Hb_001373_010 Hb_001373_010 Hb_117168_010--Hb_001373_010 Hb_003576_050 Hb_003576_050 Hb_117168_010--Hb_003576_050 Hb_001091_020 Hb_001091_020 Hb_117168_010--Hb_001091_020 Hb_000086_370 Hb_000086_370 Hb_117168_010--Hb_000086_370 Hb_006241_010 Hb_006241_010 Hb_117168_010--Hb_006241_010 Hb_012807_060 Hb_012807_060 Hb_002551_090--Hb_012807_060 Hb_001158_080 Hb_001158_080 Hb_002551_090--Hb_001158_080 Hb_000934_290 Hb_000934_290 Hb_002551_090--Hb_000934_290 Hb_008140_060 Hb_008140_060 Hb_002551_090--Hb_008140_060 Hb_003052_120 Hb_003052_120 Hb_002551_090--Hb_003052_120 Hb_022501_020 Hb_022501_020 Hb_002551_090--Hb_022501_020 Hb_000521_300 Hb_000521_300 Hb_001373_010--Hb_000521_300 Hb_002218_070 Hb_002218_070 Hb_001373_010--Hb_002218_070 Hb_004218_160 Hb_004218_160 Hb_001373_010--Hb_004218_160 Hb_007919_040 Hb_007919_040 Hb_001373_010--Hb_007919_040 Hb_057079_020 Hb_057079_020 Hb_001373_010--Hb_057079_020 Hb_009823_010 Hb_009823_010 Hb_003576_050--Hb_009823_010 Hb_003517_020 Hb_003517_020 Hb_003576_050--Hb_003517_020 Hb_001408_050 Hb_001408_050 Hb_003576_050--Hb_001408_050 Hb_000313_370 Hb_000313_370 Hb_003576_050--Hb_000313_370 Hb_001248_030 Hb_001248_030 Hb_003576_050--Hb_001248_030 Hb_000928_040 Hb_000928_040 Hb_003576_050--Hb_000928_040 Hb_001091_020--Hb_000313_370 Hb_005880_010 Hb_005880_010 Hb_001091_020--Hb_005880_010 Hb_000141_010 Hb_000141_010 Hb_001091_020--Hb_000141_010 Hb_001091_020--Hb_002218_070 Hb_002660_040 Hb_002660_040 Hb_001091_020--Hb_002660_040 Hb_000657_030 Hb_000657_030 Hb_000086_370--Hb_000657_030 Hb_000086_370--Hb_000521_300 Hb_004195_170 Hb_004195_170 Hb_000086_370--Hb_004195_170 Hb_000120_980 Hb_000120_980 Hb_000086_370--Hb_000120_980 Hb_000589_180 Hb_000589_180 Hb_000086_370--Hb_000589_180 Hb_000086_370--Hb_012807_060 Hb_006241_010--Hb_022501_020 Hb_025432_010 Hb_025432_010 Hb_006241_010--Hb_025432_010 Hb_008226_120 Hb_008226_120 Hb_006241_010--Hb_008226_120 Hb_064985_010 Hb_064985_010 Hb_006241_010--Hb_064985_010 Hb_006241_010--Hb_002660_040 Hb_006241_010--Hb_012807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51911 20.4276 2.32546 11.1198 1.09038 1.80928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.171348 0.134694 1.43513 30.6374 7.28772

CAGE analysis