Hb_000657_030

Information

Type transcription factor
Description TF Family: bZIP
Location Contig657: 71365-71829
Sequence    

Annotation

kegg
ID rcu:RCOM_1448130
description Ocs element-binding factor, putative
nr
ID XP_002512945.1
description Ocs element-binding factor, putative [Ricinus communis]
swissprot
ID P24068
description Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
trembl
ID B9RH86
description Ocs element-binding factor, putative OS=Ricinus communis GN=RCOM_1448130 PE=4 SV=1
Gene Ontology
ID GO:0003700
description ocs element-binding factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52779: 71079-72491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000657_030 0.0 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
2 Hb_000086_370 0.0910469248 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
3 Hb_009581_040 0.1047958671 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
4 Hb_003430_020 0.1228378052 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
5 Hb_000085_230 0.1242295375 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
6 Hb_000579_180 0.1243452268 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
7 Hb_004195_170 0.1262445039 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001514_210 0.1338591056 - - hypothetical protein VITISV_012133 [Vitis vinifera]
9 Hb_012807_060 0.1347514461 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000589_180 0.1352720256 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
11 Hb_008406_020 0.1369029243 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
12 Hb_008226_120 0.1373779882 - - ATP binding protein, putative [Ricinus communis]
13 Hb_004218_160 0.1379169259 - - NBS-LRR type disease resistance protein [Medicago truncatula]
14 Hb_012753_200 0.1398423813 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
15 Hb_001862_060 0.144652816 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
16 Hb_003376_200 0.1449647907 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000255_020 0.1465998481 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
18 Hb_007709_010 0.1476047891 - - -
19 Hb_003453_030 0.1482310784 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
20 Hb_001894_040 0.1483605137 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000657_030 Hb_000657_030 Hb_000086_370 Hb_000086_370 Hb_000657_030--Hb_000086_370 Hb_009581_040 Hb_009581_040 Hb_000657_030--Hb_009581_040 Hb_003430_020 Hb_003430_020 Hb_000657_030--Hb_003430_020 Hb_000085_230 Hb_000085_230 Hb_000657_030--Hb_000085_230 Hb_000579_180 Hb_000579_180 Hb_000657_030--Hb_000579_180 Hb_004195_170 Hb_004195_170 Hb_000657_030--Hb_004195_170 Hb_000521_300 Hb_000521_300 Hb_000086_370--Hb_000521_300 Hb_000086_370--Hb_004195_170 Hb_000120_980 Hb_000120_980 Hb_000086_370--Hb_000120_980 Hb_000589_180 Hb_000589_180 Hb_000086_370--Hb_000589_180 Hb_012807_060 Hb_012807_060 Hb_000086_370--Hb_012807_060 Hb_009581_040--Hb_003430_020 Hb_008406_020 Hb_008406_020 Hb_009581_040--Hb_008406_020 Hb_074312_020 Hb_074312_020 Hb_009581_040--Hb_074312_020 Hb_001862_060 Hb_001862_060 Hb_009581_040--Hb_001862_060 Hb_000255_020 Hb_000255_020 Hb_009581_040--Hb_000255_020 Hb_002276_100 Hb_002276_100 Hb_009581_040--Hb_002276_100 Hb_134017_010 Hb_134017_010 Hb_003430_020--Hb_134017_010 Hb_009581_050 Hb_009581_050 Hb_003430_020--Hb_009581_050 Hb_003439_090 Hb_003439_090 Hb_003430_020--Hb_003439_090 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200 Hb_003430_020--Hb_012807_060 Hb_001894_040 Hb_001894_040 Hb_000085_230--Hb_001894_040 Hb_000085_230--Hb_000579_180 Hb_001514_210 Hb_001514_210 Hb_000085_230--Hb_001514_210 Hb_012753_200 Hb_012753_200 Hb_000085_230--Hb_012753_200 Hb_000008_080 Hb_000008_080 Hb_000085_230--Hb_000008_080 Hb_000836_390 Hb_000836_390 Hb_000085_230--Hb_000836_390 Hb_000579_180--Hb_012753_200 Hb_003807_020 Hb_003807_020 Hb_000579_180--Hb_003807_020 Hb_010926_010 Hb_010926_010 Hb_000579_180--Hb_010926_010 Hb_000579_180--Hb_012807_060 Hb_000579_180--Hb_001894_040 Hb_003453_030 Hb_003453_030 Hb_004195_170--Hb_003453_030 Hb_004195_170--Hb_012807_060 Hb_022501_020 Hb_022501_020 Hb_004195_170--Hb_022501_020 Hb_001408_050 Hb_001408_050 Hb_004195_170--Hb_001408_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.9749 841.731 101.959 260.363 12.3047 6.70218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.85518 2.85835 2.77998 750.092 140.488

CAGE analysis