Hb_007919_040

Information

Type -
Description -
Location Contig7919: 37496-39481
Sequence    

Annotation

kegg
ID pop:POPTR_0005s28080g
description POPTRDRAFT_862283; kinase family protein
nr
ID XP_012073533.1
description PREDICTED: protein LYK5 [Jatropha curcas]
swissprot
ID O22808
description Protein LYK5 OS=Arabidopsis thaliana GN=LYK5 PE=2 SV=1
trembl
ID A0A067KWV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08006 PE=4 SV=1
Gene Ontology
ID GO:0004714
description protein lyk5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58369: 38704-39016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_040 0.0 - - PREDICTED: protein LYK5 [Jatropha curcas]
2 Hb_003576_050 0.1419653897 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
3 Hb_000853_060 0.1441967067 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
4 Hb_003517_020 0.1458263909 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
5 Hb_000928_040 0.1491391803 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000367_310 0.1510464402 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
7 Hb_002291_020 0.1549033074 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001373_010 0.1589296227 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_149515_010 0.1653647163 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
10 Hb_000638_090 0.1671843636 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_001114_070 0.1672026932 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
12 Hb_001408_050 0.1675240764 - - conserved hypothetical protein [Ricinus communis]
13 Hb_067034_030 0.1690381691 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_000527_070 0.1700595306 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
15 Hb_001248_030 0.1705178821 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_006594_060 0.1725178045 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
17 Hb_000963_200 0.1728887786 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_011200_020 0.1752716799 - - aldo-keto reductase, putative [Ricinus communis]
19 Hb_012098_170 0.1767300862 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_16874 [Jatropha curcas]
20 Hb_000816_020 0.1769040865 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_007919_040 Hb_007919_040 Hb_003576_050 Hb_003576_050 Hb_007919_040--Hb_003576_050 Hb_000853_060 Hb_000853_060 Hb_007919_040--Hb_000853_060 Hb_003517_020 Hb_003517_020 Hb_007919_040--Hb_003517_020 Hb_000928_040 Hb_000928_040 Hb_007919_040--Hb_000928_040 Hb_000367_310 Hb_000367_310 Hb_007919_040--Hb_000367_310 Hb_002291_020 Hb_002291_020 Hb_007919_040--Hb_002291_020 Hb_009823_010 Hb_009823_010 Hb_003576_050--Hb_009823_010 Hb_003576_050--Hb_003517_020 Hb_001408_050 Hb_001408_050 Hb_003576_050--Hb_001408_050 Hb_000313_370 Hb_000313_370 Hb_003576_050--Hb_000313_370 Hb_001248_030 Hb_001248_030 Hb_003576_050--Hb_001248_030 Hb_003576_050--Hb_000928_040 Hb_000165_210 Hb_000165_210 Hb_000853_060--Hb_000165_210 Hb_003120_040 Hb_003120_040 Hb_000853_060--Hb_003120_040 Hb_006573_300 Hb_006573_300 Hb_000853_060--Hb_006573_300 Hb_001114_070 Hb_001114_070 Hb_000853_060--Hb_001114_070 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090 Hb_003517_020--Hb_000313_370 Hb_003517_020--Hb_000928_040 Hb_000702_060 Hb_000702_060 Hb_003517_020--Hb_000702_060 Hb_002524_030 Hb_002524_030 Hb_003517_020--Hb_002524_030 Hb_000645_210 Hb_000645_210 Hb_000928_040--Hb_000645_210 Hb_000928_040--Hb_000367_310 Hb_000093_150 Hb_000093_150 Hb_000928_040--Hb_000093_150 Hb_000367_310--Hb_001408_050 Hb_055305_010 Hb_055305_010 Hb_000367_310--Hb_055305_010 Hb_000367_310--Hb_003576_050 Hb_003453_030 Hb_003453_030 Hb_000367_310--Hb_003453_030 Hb_000649_180 Hb_000649_180 Hb_002291_020--Hb_000649_180 Hb_000141_010 Hb_000141_010 Hb_002291_020--Hb_000141_010 Hb_149515_010 Hb_149515_010 Hb_002291_020--Hb_149515_010 Hb_012565_040 Hb_012565_040 Hb_002291_020--Hb_012565_040 Hb_000527_070 Hb_000527_070 Hb_002291_020--Hb_000527_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04445 14.0423 2.52433 5.11914 0.290855 1.12362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04705 1.43171 2.37515 21.6461 5.36954

CAGE analysis