Hb_000853_060

Information

Type -
Description -
Location Contig853: 58279-60080
Sequence    

Annotation

kegg
ID rcu:RCOM_1179450
description hypothetical protein
nr
ID XP_012082814.1
description PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13967 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60463: 58576-59088 , PASA_asmbl_60464: 59222-59708 , PASA_asmbl_60465: 59646-59922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_060 0.0 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
2 Hb_000165_210 0.1396267752 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
3 Hb_007919_040 0.1441967067 - - PREDICTED: protein LYK5 [Jatropha curcas]
4 Hb_003120_040 0.1517449207 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
5 Hb_006573_300 0.1570593395 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001114_070 0.1588729025 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
7 Hb_029584_090 0.1673564115 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
8 Hb_152868_030 0.1752676895 - - abhydrolase domain containing, putative [Ricinus communis]
9 Hb_000084_220 0.1767364669 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
10 Hb_074506_010 0.1800224939 - - JHL25H03.10 [Jatropha curcas]
11 Hb_003845_020 0.182269607 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000963_200 0.1827053343 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_011633_040 0.1828552362 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
14 Hb_002291_020 0.1833217973 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
15 Hb_006453_010 0.1841138389 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
16 Hb_011200_020 0.1896737248 - - aldo-keto reductase, putative [Ricinus communis]
17 Hb_005181_180 0.1905801735 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000421_270 0.1908539673 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
19 Hb_009545_020 0.1919144989 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
20 Hb_000327_070 0.1929938868 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_060 Hb_000853_060 Hb_000165_210 Hb_000165_210 Hb_000853_060--Hb_000165_210 Hb_007919_040 Hb_007919_040 Hb_000853_060--Hb_007919_040 Hb_003120_040 Hb_003120_040 Hb_000853_060--Hb_003120_040 Hb_006573_300 Hb_006573_300 Hb_000853_060--Hb_006573_300 Hb_001114_070 Hb_001114_070 Hb_000853_060--Hb_001114_070 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090 Hb_000120_390 Hb_000120_390 Hb_000165_210--Hb_000120_390 Hb_000414_110 Hb_000414_110 Hb_000165_210--Hb_000414_110 Hb_001206_090 Hb_001206_090 Hb_000165_210--Hb_001206_090 Hb_002304_140 Hb_002304_140 Hb_000165_210--Hb_002304_140 Hb_000879_190 Hb_000879_190 Hb_000165_210--Hb_000879_190 Hb_003576_050 Hb_003576_050 Hb_007919_040--Hb_003576_050 Hb_003517_020 Hb_003517_020 Hb_007919_040--Hb_003517_020 Hb_000928_040 Hb_000928_040 Hb_007919_040--Hb_000928_040 Hb_000367_310 Hb_000367_310 Hb_007919_040--Hb_000367_310 Hb_002291_020 Hb_002291_020 Hb_007919_040--Hb_002291_020 Hb_124315_030 Hb_124315_030 Hb_003120_040--Hb_124315_030 Hb_009545_020 Hb_009545_020 Hb_003120_040--Hb_009545_020 Hb_000963_200 Hb_000963_200 Hb_003120_040--Hb_000963_200 Hb_007849_010 Hb_007849_010 Hb_003120_040--Hb_007849_010 Hb_003120_040--Hb_006573_300 Hb_006573_300--Hb_001114_070 Hb_006453_010 Hb_006453_010 Hb_006573_300--Hb_006453_010 Hb_007676_020 Hb_007676_020 Hb_006573_300--Hb_007676_020 Hb_004195_090 Hb_004195_090 Hb_006573_300--Hb_004195_090 Hb_020805_170 Hb_020805_170 Hb_006573_300--Hb_020805_170 Hb_001114_070--Hb_007676_020 Hb_001114_070--Hb_020805_170 Hb_031862_040 Hb_031862_040 Hb_001114_070--Hb_031862_040 Hb_012098_170 Hb_012098_170 Hb_001114_070--Hb_012098_170 Hb_029584_090--Hb_000963_200 Hb_004495_020 Hb_004495_020 Hb_029584_090--Hb_004495_020 Hb_001341_200 Hb_001341_200 Hb_029584_090--Hb_001341_200 Hb_032631_050 Hb_032631_050 Hb_029584_090--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_029584_090--Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_029584_090--Hb_002025_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.650173 7.77352 2.91052 4.14697 0.0635855 0.376584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87896 3.03558 2.28507 15.2302 3.42573

CAGE analysis