Hb_007849_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig7849: 16164-17358
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03490g
description POPTRDRAFT_248113; hypothetical protein
nr
ID XP_011036293.1
description PREDICTED: myb-related protein Myb4-like [Populus euphratica]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JLQ9
description MYB family protein OS=Jatropha curcas GN=JCGZ_23541 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58063: 16385-16919 , PASA_asmbl_58064: 17063-17359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007849_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
2 Hb_003120_040 0.1873404374 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
3 Hb_000007_430 0.2056814243 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
4 Hb_000984_260 0.2135991209 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
5 Hb_002918_130 0.2145152667 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
6 Hb_001675_030 0.2252473659 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000599_310 0.2257414259 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
8 Hb_009736_010 0.2285004239 - - conserved hypothetical protein [Ricinus communis]
9 Hb_019863_030 0.2337400864 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
10 Hb_000421_270 0.2364447922 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
11 Hb_030944_010 0.2396425489 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
12 Hb_001456_050 0.2411020723 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_001287_060 0.2466137846 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
14 Hb_020178_010 0.2487317163 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
15 Hb_002835_340 0.2492197625 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
16 Hb_001300_170 0.2495245983 - - conserved hypothetical protein [Ricinus communis]
17 Hb_124315_030 0.2502350646 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
18 Hb_008759_020 0.2514029978 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
19 Hb_000732_190 0.2529136186 - - structural molecule, putative [Ricinus communis]
20 Hb_000450_160 0.2532821581 - - hypothetical protein JCGZ_16746 [Jatropha curcas]

Gene co-expression network

sample Hb_007849_010 Hb_007849_010 Hb_003120_040 Hb_003120_040 Hb_007849_010--Hb_003120_040 Hb_000007_430 Hb_000007_430 Hb_007849_010--Hb_000007_430 Hb_000984_260 Hb_000984_260 Hb_007849_010--Hb_000984_260 Hb_002918_130 Hb_002918_130 Hb_007849_010--Hb_002918_130 Hb_001675_030 Hb_001675_030 Hb_007849_010--Hb_001675_030 Hb_000599_310 Hb_000599_310 Hb_007849_010--Hb_000599_310 Hb_000853_060 Hb_000853_060 Hb_003120_040--Hb_000853_060 Hb_124315_030 Hb_124315_030 Hb_003120_040--Hb_124315_030 Hb_009545_020 Hb_009545_020 Hb_003120_040--Hb_009545_020 Hb_000963_200 Hb_000963_200 Hb_003120_040--Hb_000963_200 Hb_006573_300 Hb_006573_300 Hb_003120_040--Hb_006573_300 Hb_019863_030 Hb_019863_030 Hb_000007_430--Hb_019863_030 Hb_000005_340 Hb_000005_340 Hb_000007_430--Hb_000005_340 Hb_000007_430--Hb_000984_260 Hb_000175_470 Hb_000175_470 Hb_000007_430--Hb_000175_470 Hb_001922_060 Hb_001922_060 Hb_000007_430--Hb_001922_060 Hb_172706_020 Hb_172706_020 Hb_000007_430--Hb_172706_020 Hb_002960_090 Hb_002960_090 Hb_000984_260--Hb_002960_090 Hb_005701_110 Hb_005701_110 Hb_000984_260--Hb_005701_110 Hb_006210_020 Hb_006210_020 Hb_000984_260--Hb_006210_020 Hb_000984_260--Hb_019863_030 Hb_001728_020 Hb_001728_020 Hb_000984_260--Hb_001728_020 Hb_000112_100 Hb_000112_100 Hb_002918_130--Hb_000112_100 Hb_020178_010 Hb_020178_010 Hb_002918_130--Hb_020178_010 Hb_006503_010 Hb_006503_010 Hb_002918_130--Hb_006503_010 Hb_009736_010 Hb_009736_010 Hb_002918_130--Hb_009736_010 Hb_007101_290 Hb_007101_290 Hb_002918_130--Hb_007101_290 Hb_172632_050 Hb_172632_050 Hb_001675_030--Hb_172632_050 Hb_003687_030 Hb_003687_030 Hb_001675_030--Hb_003687_030 Hb_000529_280 Hb_000529_280 Hb_001675_030--Hb_000529_280 Hb_012807_130 Hb_012807_130 Hb_001675_030--Hb_012807_130 Hb_028707_070 Hb_028707_070 Hb_001675_030--Hb_028707_070 Hb_001675_030--Hb_001728_020 Hb_002338_030 Hb_002338_030 Hb_000599_310--Hb_002338_030 Hb_002835_340 Hb_002835_340 Hb_000599_310--Hb_002835_340 Hb_000886_030 Hb_000886_030 Hb_000599_310--Hb_000886_030 Hb_000049_200 Hb_000049_200 Hb_000599_310--Hb_000049_200 Hb_000599_310--Hb_002960_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0885044 5.5269 3.79101 4.10266 0 0.0194901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46961 4.66322 0.146723 6.50744 0.326148

CAGE analysis