Hb_007101_290

Information

Type transcription factor
Description TF Family: C2H2
Location Contig7101: 175383-176123
Sequence    

Annotation

kegg
ID rcu:RCOM_0699890
description hypothetical protein
nr
ID XP_002520214.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q39264
description Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1
trembl
ID B9S2J5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699890 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55266: 175695-175875 , PASA_asmbl_55267: 176114-176604 , PASA_asmbl_55268: 176202-176672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_290 0.0 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
2 Hb_001703_110 0.1756992155 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_006420_090 0.1887633123 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
4 Hb_003960_020 0.2272986762 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000032_580 0.2310040228 - - hypothetical protein RCOM_1311780 [Ricinus communis]
6 Hb_002918_130 0.257548376 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
7 Hb_008479_020 0.2604295918 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
8 Hb_002284_190 0.262432847 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
9 Hb_009545_020 0.274428433 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
10 Hb_031527_060 0.2763457454 - - glutamate decarboxylase, putative [Ricinus communis]
11 Hb_000772_060 0.2837244882 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000300_130 0.2840887378 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
13 Hb_026527_020 0.2847899469 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
14 Hb_015220_010 0.2873506918 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
15 Hb_003435_060 0.288400286 - - carbonic anhydrase, putative [Ricinus communis]
16 Hb_008014_030 0.2905982411 - - Aquaporin NIP1.1, putative [Ricinus communis]
17 Hb_001832_020 0.2949499553 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
18 Hb_009736_010 0.2953005767 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001085_100 0.2968361706 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_007317_080 0.3011422966 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]

Gene co-expression network

sample Hb_007101_290 Hb_007101_290 Hb_001703_110 Hb_001703_110 Hb_007101_290--Hb_001703_110 Hb_006420_090 Hb_006420_090 Hb_007101_290--Hb_006420_090 Hb_003960_020 Hb_003960_020 Hb_007101_290--Hb_003960_020 Hb_000032_580 Hb_000032_580 Hb_007101_290--Hb_000032_580 Hb_002918_130 Hb_002918_130 Hb_007101_290--Hb_002918_130 Hb_008479_020 Hb_008479_020 Hb_007101_290--Hb_008479_020 Hb_000813_150 Hb_000813_150 Hb_001703_110--Hb_000813_150 Hb_001703_110--Hb_003960_020 Hb_169492_020 Hb_169492_020 Hb_001703_110--Hb_169492_020 Hb_000772_060 Hb_000772_060 Hb_001703_110--Hb_000772_060 Hb_001703_110--Hb_002918_130 Hb_026527_020 Hb_026527_020 Hb_006420_090--Hb_026527_020 Hb_007317_080 Hb_007317_080 Hb_006420_090--Hb_007317_080 Hb_105328_030 Hb_105328_030 Hb_006420_090--Hb_105328_030 Hb_000300_130 Hb_000300_130 Hb_006420_090--Hb_000300_130 Hb_000836_490 Hb_000836_490 Hb_006420_090--Hb_000836_490 Hb_015220_010 Hb_015220_010 Hb_003960_020--Hb_015220_010 Hb_001729_040 Hb_001729_040 Hb_003960_020--Hb_001729_040 Hb_009813_080 Hb_009813_080 Hb_003960_020--Hb_009813_080 Hb_000892_020 Hb_000892_020 Hb_003960_020--Hb_000892_020 Hb_000836_230 Hb_000836_230 Hb_000032_580--Hb_000836_230 Hb_000140_160 Hb_000140_160 Hb_000032_580--Hb_000140_160 Hb_001268_130 Hb_001268_130 Hb_000032_580--Hb_001268_130 Hb_000256_100 Hb_000256_100 Hb_000032_580--Hb_000256_100 Hb_000032_580--Hb_026527_020 Hb_000112_100 Hb_000112_100 Hb_002918_130--Hb_000112_100 Hb_007849_010 Hb_007849_010 Hb_002918_130--Hb_007849_010 Hb_020178_010 Hb_020178_010 Hb_002918_130--Hb_020178_010 Hb_006503_010 Hb_006503_010 Hb_002918_130--Hb_006503_010 Hb_009736_010 Hb_009736_010 Hb_002918_130--Hb_009736_010 Hb_001085_100 Hb_001085_100 Hb_008479_020--Hb_001085_100 Hb_001832_020 Hb_001832_020 Hb_008479_020--Hb_001832_020 Hb_008479_020--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_008479_020--Hb_002311_170 Hb_003052_230 Hb_003052_230 Hb_008479_020--Hb_003052_230 Hb_027472_230 Hb_027472_230 Hb_008479_020--Hb_027472_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.146611 9.94551 0.371826 7.04521 0.030445 0.0287407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149613 23.2903 0.739167 27.4064 0.468421

CAGE analysis