Hb_000772_060

Information

Type -
Description -
Location Contig772: 124381-125103
Sequence    

Annotation

kegg
ID rcu:RCOM_1250530
description hypothetical protein
nr
ID XP_002522240.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8C1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000772_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001703_110 0.2525903414 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_000868_100 0.2664860437 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
4 Hb_011077_020 0.2665558206 - - kinase, putative [Ricinus communis]
5 Hb_031527_060 0.2683554316 - - glutamate decarboxylase, putative [Ricinus communis]
6 Hb_002571_040 0.2691617929 - - hypothetical protein RCOM_1321060 [Ricinus communis]
7 Hb_101733_040 0.272781273 - - cytochrome P450 CYP71B63v2 [Populus trichocarpa]
8 Hb_007101_290 0.2837244882 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
9 Hb_009545_020 0.2880838181 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
10 Hb_000813_150 0.2897914944 - - -
11 Hb_001638_080 0.290893525 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
12 Hb_002918_130 0.2918993654 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
13 Hb_001113_030 0.2919671359 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
14 Hb_009736_010 0.2960385774 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000671_160 0.3032334573 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
16 Hb_006503_010 0.304282658 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_000216_010 0.3048033308 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
18 Hb_000671_170 0.3052861131 - - kinase, putative [Ricinus communis]
19 Hb_000787_040 0.3053520535 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
20 Hb_001486_150 0.3128914275 - - -

Gene co-expression network

sample Hb_000772_060 Hb_000772_060 Hb_001703_110 Hb_001703_110 Hb_000772_060--Hb_001703_110 Hb_000868_100 Hb_000868_100 Hb_000772_060--Hb_000868_100 Hb_011077_020 Hb_011077_020 Hb_000772_060--Hb_011077_020 Hb_031527_060 Hb_031527_060 Hb_000772_060--Hb_031527_060 Hb_002571_040 Hb_002571_040 Hb_000772_060--Hb_002571_040 Hb_101733_040 Hb_101733_040 Hb_000772_060--Hb_101733_040 Hb_007101_290 Hb_007101_290 Hb_001703_110--Hb_007101_290 Hb_000813_150 Hb_000813_150 Hb_001703_110--Hb_000813_150 Hb_003960_020 Hb_003960_020 Hb_001703_110--Hb_003960_020 Hb_169492_020 Hb_169492_020 Hb_001703_110--Hb_169492_020 Hb_002918_130 Hb_002918_130 Hb_001703_110--Hb_002918_130 Hb_000671_170 Hb_000671_170 Hb_000868_100--Hb_000671_170 Hb_000694_060 Hb_000694_060 Hb_000868_100--Hb_000694_060 Hb_000671_160 Hb_000671_160 Hb_000868_100--Hb_000671_160 Hb_008173_030 Hb_008173_030 Hb_000868_100--Hb_008173_030 Hb_004460_050 Hb_004460_050 Hb_000868_100--Hb_004460_050 Hb_000049_240 Hb_000049_240 Hb_000868_100--Hb_000049_240 Hb_011077_020--Hb_004460_050 Hb_011077_020--Hb_000868_100 Hb_011077_020--Hb_000671_170 Hb_002211_040 Hb_002211_040 Hb_011077_020--Hb_002211_040 Hb_001113_030 Hb_001113_030 Hb_011077_020--Hb_001113_030 Hb_009545_020 Hb_009545_020 Hb_031527_060--Hb_009545_020 Hb_000645_210 Hb_000645_210 Hb_031527_060--Hb_000645_210 Hb_009736_010 Hb_009736_010 Hb_031527_060--Hb_009736_010 Hb_000928_040 Hb_000928_040 Hb_031527_060--Hb_000928_040 Hb_000300_130 Hb_000300_130 Hb_031527_060--Hb_000300_130 Hb_003120_040 Hb_003120_040 Hb_031527_060--Hb_003120_040 Hb_005965_020 Hb_005965_020 Hb_002571_040--Hb_005965_020 Hb_000216_010 Hb_000216_010 Hb_002571_040--Hb_000216_010 Hb_002571_040--Hb_002918_130 Hb_011099_010 Hb_011099_010 Hb_002571_040--Hb_011099_010 Hb_006503_010 Hb_006503_010 Hb_002571_040--Hb_006503_010 Hb_000215_350 Hb_000215_350 Hb_101733_040--Hb_000215_350 Hb_002639_100 Hb_002639_100 Hb_101733_040--Hb_002639_100 Hb_001268_120 Hb_001268_120 Hb_101733_040--Hb_001268_120 Hb_101733_040--Hb_000671_170 Hb_001439_230 Hb_001439_230 Hb_101733_040--Hb_001439_230 Hb_006846_020 Hb_006846_020 Hb_101733_040--Hb_006846_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134138 4.10199 0.132829 1.63772 0 0.63745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 3.46699 0.217843 2.52081 0.120766

CAGE analysis