Hb_031527_060

Information

Type -
Description -
Location Contig31527: 30936-37206
Sequence    

Annotation

kegg
ID rcu:RCOM_0112580
description glutamate decarboxylase, putative (EC:4.1.1.15)
nr
ID XP_002528515.1
description glutamate decarboxylase, putative [Ricinus communis]
swissprot
ID Q42521
description Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2
trembl
ID B9SR96
description Glutamate decarboxylase OS=Ricinus communis GN=RCOM_0112580 PE=3 SV=1
Gene Ontology
ID GO:0004351
description glutamate decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33258: 30954-37213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_060 0.0 - - glutamate decarboxylase, putative [Ricinus communis]
2 Hb_009545_020 0.1017063897 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
3 Hb_000645_210 0.1604017123 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
4 Hb_009736_010 0.1613873096 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000928_040 0.1847868215 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000300_130 0.1889914919 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
7 Hb_003120_040 0.2019031818 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
8 Hb_000853_060 0.21029055 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
9 Hb_001114_070 0.2138884037 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
10 Hb_031862_040 0.2141205264 - - purine transporter, putative [Ricinus communis]
11 Hb_000868_100 0.2144447407 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
12 Hb_000671_160 0.2159725045 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
13 Hb_000671_170 0.2167871416 - - kinase, putative [Ricinus communis]
14 Hb_004965_060 0.2186164559 - - PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
15 Hb_006573_300 0.220521185 - - ATP binding protein, putative [Ricinus communis]
16 Hb_124315_030 0.2205471507 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
17 Hb_011114_030 0.22156261 - - PREDICTED: probable carboxylesterase 15 [Jatropha curcas]
18 Hb_007676_020 0.2217792518 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
19 Hb_001268_120 0.2247599514 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004195_110 0.2286589444 - - hypothetical protein JCGZ_24010 [Jatropha curcas]

Gene co-expression network

sample Hb_031527_060 Hb_031527_060 Hb_009545_020 Hb_009545_020 Hb_031527_060--Hb_009545_020 Hb_000645_210 Hb_000645_210 Hb_031527_060--Hb_000645_210 Hb_009736_010 Hb_009736_010 Hb_031527_060--Hb_009736_010 Hb_000928_040 Hb_000928_040 Hb_031527_060--Hb_000928_040 Hb_000300_130 Hb_000300_130 Hb_031527_060--Hb_000300_130 Hb_003120_040 Hb_003120_040 Hb_031527_060--Hb_003120_040 Hb_009545_020--Hb_009736_010 Hb_009545_020--Hb_003120_040 Hb_124315_030 Hb_124315_030 Hb_009545_020--Hb_124315_030 Hb_000853_060 Hb_000853_060 Hb_009545_020--Hb_000853_060 Hb_004965_060 Hb_004965_060 Hb_009545_020--Hb_004965_060 Hb_000645_210--Hb_000928_040 Hb_127886_010 Hb_127886_010 Hb_000645_210--Hb_127886_010 Hb_001206_090 Hb_001206_090 Hb_000645_210--Hb_001206_090 Hb_001114_070 Hb_001114_070 Hb_000645_210--Hb_001114_070 Hb_000093_150 Hb_000093_150 Hb_000645_210--Hb_000093_150 Hb_004195_090 Hb_004195_090 Hb_009736_010--Hb_004195_090 Hb_001170_010 Hb_001170_010 Hb_009736_010--Hb_001170_010 Hb_004724_450 Hb_004724_450 Hb_009736_010--Hb_004724_450 Hb_009736_010--Hb_124315_030 Hb_003576_050 Hb_003576_050 Hb_000928_040--Hb_003576_050 Hb_003517_020 Hb_003517_020 Hb_000928_040--Hb_003517_020 Hb_000367_310 Hb_000367_310 Hb_000928_040--Hb_000367_310 Hb_007919_040 Hb_007919_040 Hb_000928_040--Hb_007919_040 Hb_000928_040--Hb_000093_150 Hb_000300_130--Hb_009545_020 Hb_000165_210 Hb_000165_210 Hb_000300_130--Hb_000165_210 Hb_000300_130--Hb_001206_090 Hb_183623_010 Hb_183623_010 Hb_000300_130--Hb_183623_010 Hb_001148_030 Hb_001148_030 Hb_000300_130--Hb_001148_030 Hb_003120_040--Hb_000853_060 Hb_003120_040--Hb_124315_030 Hb_000963_200 Hb_000963_200 Hb_003120_040--Hb_000963_200 Hb_007849_010 Hb_007849_010 Hb_003120_040--Hb_007849_010 Hb_006573_300 Hb_006573_300 Hb_003120_040--Hb_006573_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0897 108.324 8.18947 51.1073 5.94115 5.41647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8475 71.0081 22.0164 162.236 15.6285

CAGE analysis