Hb_000645_210

Information

Type transcription factor
Description TF Family: CAMTA
Location Contig645: 177070-185363
Sequence    

Annotation

kegg
ID rcu:RCOM_0999870
description calmodulin-binding transcription activator (camta), plants, putative
nr
ID XP_012084039.1
description PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
swissprot
ID O23463
description Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2
trembl
ID A0A067JV90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18971 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calmodulin-binding transcription activator 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52278: 180465-182978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_210 0.0 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
2 Hb_000928_040 0.1234200591 - - cytochrome P450, putative [Ricinus communis]
3 Hb_127886_010 0.1278523822 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_001206_090 0.1563468272 - - pyruvate decarboxylase [Hevea brasiliensis]
5 Hb_031527_060 0.1604017123 - - glutamate decarboxylase, putative [Ricinus communis]
6 Hb_001114_070 0.1668021208 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
7 Hb_000093_150 0.1707872639 - - 6-phosphogluconolactonase, putative [Ricinus communis]
8 Hb_004195_110 0.1765320071 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
9 Hb_003576_050 0.1774316621 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
10 Hb_006717_070 0.1788892933 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
11 Hb_020805_170 0.1821377988 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
12 Hb_007259_040 0.1823533171 - - hypothetical protein VITISV_005492 [Vitis vinifera]
13 Hb_000165_210 0.1854229655 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
14 Hb_003517_020 0.18644294 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
15 Hb_007676_020 0.1875046363 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
16 Hb_001946_150 0.1911817612 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000098_310 0.1945204597 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
18 Hb_002304_140 0.1973086793 - - ring finger protein, putative [Ricinus communis]
19 Hb_011512_130 0.1979047984 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
20 Hb_000086_660 0.199531442 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000645_210 Hb_000645_210 Hb_000928_040 Hb_000928_040 Hb_000645_210--Hb_000928_040 Hb_127886_010 Hb_127886_010 Hb_000645_210--Hb_127886_010 Hb_001206_090 Hb_001206_090 Hb_000645_210--Hb_001206_090 Hb_031527_060 Hb_031527_060 Hb_000645_210--Hb_031527_060 Hb_001114_070 Hb_001114_070 Hb_000645_210--Hb_001114_070 Hb_000093_150 Hb_000093_150 Hb_000645_210--Hb_000093_150 Hb_003576_050 Hb_003576_050 Hb_000928_040--Hb_003576_050 Hb_003517_020 Hb_003517_020 Hb_000928_040--Hb_003517_020 Hb_000367_310 Hb_000367_310 Hb_000928_040--Hb_000367_310 Hb_007919_040 Hb_007919_040 Hb_000928_040--Hb_007919_040 Hb_000928_040--Hb_000093_150 Hb_006717_070 Hb_006717_070 Hb_127886_010--Hb_006717_070 Hb_000227_040 Hb_000227_040 Hb_127886_010--Hb_000227_040 Hb_000395_220 Hb_000395_220 Hb_127886_010--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_127886_010--Hb_001780_150 Hb_011287_010 Hb_011287_010 Hb_127886_010--Hb_011287_010 Hb_000165_210 Hb_000165_210 Hb_001206_090--Hb_000165_210 Hb_001206_090--Hb_127886_010 Hb_000098_310 Hb_000098_310 Hb_001206_090--Hb_000098_310 Hb_001206_090--Hb_000928_040 Hb_004195_110 Hb_004195_110 Hb_001206_090--Hb_004195_110 Hb_009545_020 Hb_009545_020 Hb_031527_060--Hb_009545_020 Hb_009736_010 Hb_009736_010 Hb_031527_060--Hb_009736_010 Hb_031527_060--Hb_000928_040 Hb_000300_130 Hb_000300_130 Hb_031527_060--Hb_000300_130 Hb_003120_040 Hb_003120_040 Hb_031527_060--Hb_003120_040 Hb_006573_300 Hb_006573_300 Hb_001114_070--Hb_006573_300 Hb_007676_020 Hb_007676_020 Hb_001114_070--Hb_007676_020 Hb_020805_170 Hb_020805_170 Hb_001114_070--Hb_020805_170 Hb_031862_040 Hb_031862_040 Hb_001114_070--Hb_031862_040 Hb_000853_060 Hb_000853_060 Hb_001114_070--Hb_000853_060 Hb_012098_170 Hb_012098_170 Hb_001114_070--Hb_012098_170 Hb_000093_150--Hb_127886_010 Hb_004462_010 Hb_004462_010 Hb_000093_150--Hb_004462_010 Hb_000093_150--Hb_003517_020 Hb_002304_140 Hb_002304_140 Hb_000093_150--Hb_002304_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.60877 4.27761 0.561427 1.85637 0.815661 0.716483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.894594 1.59496 1.05269 8.84161 0.49316

CAGE analysis